Pannonibacter phragmitetus: APZ00_11560
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Entry
APZ00_11560 CDS
T04214
Name
(GenBank) RNA-binding protein
KO
K11089
60 kDa SS-A/Ro ribonucleoprotein
Organism
pphr
Pannonibacter phragmitetus
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
vWA_Ro60
TROVE
VWA_CoxE
VWA_2
Motif
Other DBs
NCBI-ProteinID:
ALV27624
UniProt:
A0A0L0J043
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Position
2481035..2482588
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AA seq
517 aa
AA seq
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MVNKAIFKTYFGQLLRKTDTVNHAGAPAHALSAREALAQYAVTGTFSDTFYAQAQDQLED
LLKHAAEADPEFLARLAIYAAEQGHMKDMPVMLLAILSGLESDAFSKAFPRVVKSGKMLR
GFVQVMRSGAAGRKSLGSRPKRMVRAWLESRTDEQLLQAMTGNDPSLADVIRMVHPKPQD
AARAAFYAWAIGKPYDVSALPAPVAAFEAFKRDTSLPLPPVPFQMLTSLPLTKEQWAEVA
LNGSWQMVRQNLNMFARKGVFEVPGVAERIAARLADPAAVRRARVFPYQLLVAWKMVSKD
VPEVVADALQDAMEVAISSVPEVPGNVVICPDVSGSMGSPVTGYRPGATSVVRCIDVAAL
VAASFLRKNRRTRVLPFAEEVVPLHLNSRDSVMANASKLAAIGGGGTDCSAPLRQLVKER
ARVDLVVFVSDNQSWMDAGGGGQTTGMMAQWTRIQRHNPAARLVCLDIQPYVQTPASGAD
VLNIGGFSDAVYGAISRFAAGNSGPEAWLRQIEAIDL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggtgaacaaggcaatcttcaagacctatttcggtcagcttctgcgcaagactgatacg
gtcaatcacgcaggcgctccggcccatgccttgagtgcacgtgaagcgctggcccagtac
gccgtgaccggtaccttcagcgatactttctacgcacaagcgcaggaccagttggaggat
ctgctcaagcacgctgccgaagctgatccggaatttctggcaaggcttgccatctatgcg
gcggaacagggccacatgaaggatatgccggtgatgctgctggcgatcctgtcgggcctt
gagagcgatgccttttcgaaggcattcccgcgtgtggtgaagagcggcaagatgctgcgc
ggtttcgtgcaggtcatgcggtccggtgctgccgggcgcaagtcgctcggaagccgcccg
aagcggatggtgcgtgcatggctggaaagccgtacggatgagcagctgctgcaggcgatg
accggcaacgatccgtcgctggccgatgtgatccgcatggttcaccccaagcctcaggat
gcagcgcgtgcggcattctatgcctgggccatcggcaagccctatgacgtgtcggcgctg
ccggcgcccgtggcggctttcgaggccttcaagcgcgataccagcctgccgctgccgccg
gtgccgttccagatgctcacctctctccctctgacgaaggagcagtgggcggaggttgca
ctcaacggctcctggcagatggtgcgccagaacctcaacatgtttgcccgcaagggtgtg
ttcgaggtgccgggcgtggcagagcggattgctgcaaggctcgctgatccggctgccgtc
cgcagggcacgcgtcttcccctaccagctgctggtggcgtggaagatggtgagcaaggac
gtgcctgaggttgttgccgatgcgctgcaggatgcgatggaggttgccatctccagcgtg
cccgaggtgccgggcaatgtggtgatctgtccggacgtgtccgggtccatgggttcgccc
gtgaccggttaccgtccgggcgccacctccgtcgttcgctgcatcgatgtggcggccctc
gtggctgcctccttcctgcggaagaaccggaggacccgcgtgctgccctttgccgaagag
gttgttccgcttcacctgaactccagggacagcgtgatggccaacgcatcgaagctggcg
gccatcggtggcggcgggacggactgttccgcaccgctgcggcagctggtgaaggaaagg
gcgcgggtggacctggtcgtgttcgtctcggacaaccagtcctggatggatgcgggcggc
ggcggccagacaacgggcatgatggcgcaatggacccgtatccagcgccataacccggct
gcgcggctcgtgtgccttgatatccagccctatgtccagacgcctgcgtctggtgcggat
gtgctgaatatcggcggcttctcggatgccgtttatggagccatcagccgttttgcggcc
ggaaactccggtccggaggcatggcttcgccagatcgaggccatcgatctttga
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