Pannonibacter phragmitetus: APZ00_16440
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Entry
APZ00_16440 CDS
T04214
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pphr
Pannonibacter phragmitetus
Pathway
pphr03410
Base excision repair
pphr03430
Mismatch repair
pphr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
APZ00_16440
03430 Mismatch repair
APZ00_16440
03440 Homologous recombination
APZ00_16440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphr03400
]
APZ00_16440
DNA repair and recombination proteins [BR:
pphr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
APZ00_16440
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
APZ00_16440
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
APZ00_16440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ATPgrasp_N
Motif
Other DBs
NCBI-ProteinID:
ALV30156
UniProt:
A0A0U3PRT9
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All DBs
Position
3586028..3587809
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AA seq
593 aa
AA seq
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MLGVTRSANGQIWRERLTQAQSLTALAMAQRFGLADVIARVMAARDVVLEEAEAFLDPTL
KGLMPDPSSLVHMDEAVARVADAVQSGTRIAIFGDYDVDGATSSALLSRYLAEVGQEAVI
HIPDRIIEGYGPNGPAIEALHHDGARLLVTVDCGSTSFEAFETAARLGLDVVVIDHHQCG
VELPQVRALVNPNRQDDLSGQGHLAAVGVTFLFLVGLNRELRRRGAFAGRREPDLLALLD
LVALGTVCDVVPLKGLNRAYVTKGLISMHARSNPGLAALADVARVGGKPSSYHLGFLLGP
RINAGGRIGDAALGARLLTTRDSAQARAIAEQLDRLNAERQAMEAVMLEEGDAQAVIRIQ
AEDPAVLLTGSDGWHPGIVGLIASRLKESHRRPAFAIAYDASGKGTGSGRSIPGVDLGRA
VRKAVEEGLLEKGGGHAMAAGLTVRREREGELTAFFNEMLREDVEIASASREMKVDAALT
AGGATIELLNKLELAGPFGAGHPEPVFAFPAHRISYADVVGNGHLRATLAGADGQTLKGI
AFKAAEKPFGEALLAGRGKTLHVAGSLSIDTWQGAQRVQLRILDVADPQVNRL
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
gtgctgggcgtgacacgttctgcaaacggacagatctggcgtgagcggctgacacaggcg
cagtcgctcaccgcccttgccatggcgcagcgcttcggccttgccgacgtgattgcccgc
gtcatggccgcccgcgatgtggtgctggaggaggcggaagcctttctggacccgacgctc
aagggcctgatgccggacccttccagccttgttcacatggatgaggcggtggcgcgggtg
gctgatgccgtccagtccggcacccgcattgccatcttcggcgattatgacgtggatggt
gccacgtcttccgcgctgctctcccgctatctggccgaggtggggcaggaggcggtgatc
catattcccgaccgcatcatcgagggctacggccccaacggccctgccatcgaggcgctg
catcacgatggggcgcggctgctggtgaccgtcgattgcggcagcacctccttcgaggct
ttcgagaccgcggcgcggctcgggctggatgtggtggtgatcgaccatcaccagtgcggc
gtggaactgccgcaggtgcgggcgctggtcaatccgaaccggcaggatgacctgtcgggg
caggggcatctggcagccgttggcgtcacgttcctgtttctcgtcggcctcaaccgcgaa
ctgcgccggcgcggcgcctttgccggacgcagggaaccggatctgctggcgctgctcgat
ctcgttgcccttggcacggtctgcgatgtggtgccgctcaagggcctgaaccgggcctat
gtcaccaagggcctcatttccatgcatgcccgttccaaccccggccttgcggcgctggcg
gatgtggcgcgggtgggcggcaagccgtcttcctatcatctgggcttcctgctggggccg
cgcatcaacgcgggcggacgcatcggcgatgcggccctcggcgcgcggcttctgactact
cgagacagcgcgcaggcccgtgccattgccgaacagctggaccggctgaatgccgagcgg
caggcgatggaagcggtgatgctggaagagggcgatgctcaggccgtcatccgcatccag
gctgaagatcctgcggtcctgctgaccggctcggacggctggcatccgggtattgtcggg
ctgatcgcctcacgcctcaaggaaagccaccgccgcccggcctttgccatcgcctatgac
gccagcggcaagggcactggctccggccgctctatccccggcgttgatcttggccgggcc
gtgcgcaaggcggtggaagaggggctgctcgaaaaaggcggcggccatgccatggcagcg
ggcctgaccgtgcggcgtgagcgggaaggggaactgaccgccttcttcaacgagatgctg
cgcgaggacgtggagatcgccagcgctagccgcgagatgaaggtggatgcggcgctgacg
gccggcggggcaacaatcgagcttctgaacaagctggaactggccgggccgtttggcgct
ggccatccggagccggtctttgccttccccgcgcaccgcatttcttatgcggatgtggtc
ggcaacggccatctgcgggcaacgctggccggtgccgatgggcagacactgaagggcatt
gccttcaaggcggcggaaaagccctttggcgaggcgctgctggccgggcggggcaagacg
ctgcatgtggcgggcagcctgtccatcgacacctggcagggcgcgcagcgggtgcagctg
cgcattctggacgtggcggacccgcaggtgaaccggctgtga
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