Pannonibacter phragmitetus: APZ00_18175
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Entry
APZ00_18175 CDS
T04214
Name
(GenBank) RNA-binding protein hfq
KO
K03666
host factor-I protein
Organism
pphr
Pannonibacter phragmitetus
Pathway
pphr02024
Quorum sensing
pphr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APZ00_18175
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
APZ00_18175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphr03019
]
APZ00_18175
03036 Chromosome and associated proteins [BR:
pphr03036
]
APZ00_18175
Messenger RNA biogenesis [BR:
pphr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
APZ00_18175
Chromosome and associated proteins [BR:
pphr03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
APZ00_18175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
ALOG_dom
Motif
Other DBs
NCBI-ProteinID:
ALV28743
UniProt:
A0A0L0J4F2
LinkDB
All DBs
Position
3977699..3977956
Genome browser
AA seq
85 aa
AA seq
DB search
MAERAQNLQDTFLNYLRKQKVPLTIFLINGVKLQGVVTWFDNFCVLLRRDGHSQLVYKHA
ISTIMPNGPVQLFEGGEEGAEKAGA
NT seq
258 nt
NT seq
+upstream
nt +downstream
nt
atggctgagcgtgcacagaatctgcaggacaccttcctcaactaccttcgcaagcagaaa
gttccgctgacgatcttcctcatcaacggcgtgaagctgcagggcgtggtgacgtggttt
gataatttctgtgttcttttgcgccgggatggtcattcccagcttgtctacaagcatgcc
atttcgaccatcatgccgaacggccccgtgcagctgttcgaaggcggtgaagaaggcgcc
gaaaaagcaggcgcctga
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