KEGG   Pannonibacter phragmitetus: APZ00_18175
Entry
APZ00_18175       CDS       T04214                                 
Name
(GenBank) RNA-binding protein hfq
  KO
K03666  host factor-I protein
Organism
pphr  Pannonibacter phragmitetus
Pathway
pphr02024  Quorum sensing
pphr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pphr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    APZ00_18175
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    APZ00_18175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pphr03019]
    APZ00_18175
   03036 Chromosome and associated proteins [BR:pphr03036]
    APZ00_18175
Messenger RNA biogenesis [BR:pphr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     APZ00_18175
Chromosome and associated proteins [BR:pphr03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    APZ00_18175
SSDB
Motif
Pfam: Hfq Hfq_1 ALOG_dom
Other DBs
NCBI-ProteinID: ALV28743
UniProt: A0A0L0J4F2
LinkDB
Position
3977699..3977956
AA seq 85 aa
MAERAQNLQDTFLNYLRKQKVPLTIFLINGVKLQGVVTWFDNFCVLLRRDGHSQLVYKHA
ISTIMPNGPVQLFEGGEEGAEKAGA
NT seq 258 nt   +upstreamnt  +downstreamnt
atggctgagcgtgcacagaatctgcaggacaccttcctcaactaccttcgcaagcagaaa
gttccgctgacgatcttcctcatcaacggcgtgaagctgcagggcgtggtgacgtggttt
gataatttctgtgttcttttgcgccgggatggtcattcccagcttgtctacaagcatgcc
atttcgaccatcatgccgaacggccccgtgcagctgttcgaaggcggtgaagaaggcgcc
gaaaaagcaggcgcctga

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