Pannonibacter phragmitetus: APZ00_18560
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Entry
APZ00_18560 CDS
T04214
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pphr
Pannonibacter phragmitetus
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pphr03016
]
APZ00_18560
Enzymes [BR:
pphr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
APZ00_18560
Transfer RNA biogenesis [BR:
pphr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
APZ00_18560
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ALV28806
UniProt:
A0A0U3P561
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All DBs
Position
4062948..4064123
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AA seq
391 aa
AA seq
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MNLITTTSDLADACKRLAAHDYVTVDTEFLRETTFWPKLCVIQLAGPDDAFIVDALATGL
DLAPFFELMRDQSVIKVFHAARQDIEIVYHLGGLIPTPLFDTQVAAMVCGFGDSVSYDQL
VQRITGARIDKSSRFTDWARRPLTQKQLEYALADVTYLRDVYLFLKANLAEQNRISWVGD
EMQVLLSEGTYRTEPEDAWQRLKMRVRKPIELAVLMEVAAWREREAQSRDVPRSRVLKDD
AIYEIAAQQPVNADALSRLRTIPRGFERSKQAEDILKAVNAAMSLPKEKLPKLPKGRQAP
DGSAAAVDLLKVLLKLVSEQQGVAAKVIATVEDLEQIAADDQASVPALEGWRREMFGEMA
LKLKRGEIALAFDGRQVVALEQPAKSKAAAE
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgatcacgaccacatctgacctcgccgacgcctgcaagcgccttgccgcccat
gattacgtgactgtggacacggaattcctgcgcgagacgacattctggccgaagctctgc
gttatccagctggctggcccggatgacgccttcatcgtcgacgcactggccaccgggctt
gaccttgcgcccttcttcgagctgatgcgcgatcagtccgtcatcaaggtcttccatgcc
gcccggcaggatatcgagatcgtctatcatctcggcggcctgatcccgacgccccttttc
gacactcaggtcgcggcaatggtctgcggctttggcgactcggtctcctatgaccagctg
gtgcaacgcatcaccggtgcgcgcatcgacaaatcctcccgcttcaccgactgggcccgc
aggcccctgacccagaagcagctggaatatgcgctggcggacgtcacctacctgcgcgat
gtctatctgttcctcaaggccaaccttgccgaacagaaccgcatcagctgggtgggcgac
gaaatgcaggtgctgctgtcggagggcacctaccggaccgaaccggaagacgcctggcag
cgcctgaagatgcgcgtgcgcaagcccatcgaactcgccgtgctgatggaagtggccgcc
tggcgcgagcgcgaggcccagtcccgcgacgtgccgcgttcccgcgtgctcaaggacgat
gccatctacgagattgccgcccagcagccggtcaatgcggacgccctcagccgcctgcgc
accatcccgcgcggcttcgaacgctccaaacaggccgaggacatcctcaaggccgtcaac
gccgccatgagcctgcccaaggagaagctgccgaagctgcccaagggccgtcaggcgccc
gatggctctgccgccgcggtggaccttctgaaggtgctgctgaagctcgtcagcgaacag
cagggcgttgccgccaaggtgatcgcaacggtcgaagatctggagcagatcgccgccgat
gatcaggccagcgtgcctgcgctggaaggctggcgccgcgaaatgttcggcgagatggcc
ctgaagctcaagcgcggcgaaatcgccctcgccttcgacggccgccaggtcgtggcgctg
gagcagcccgccaagtccaaggccgctgcggagtaa
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