Pannonibacter phragmitetus: APZ00_21695
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Entry
APZ00_21695 CDS
T04214
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pphr
Pannonibacter phragmitetus
Pathway
pphr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APZ00_21695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphr03021
]
APZ00_21695
03400 DNA repair and recombination proteins [BR:
pphr03400
]
APZ00_21695
Enzymes [BR:
pphr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APZ00_21695
Transcription machinery [BR:
pphr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APZ00_21695
DNA repair and recombination proteins [BR:
pphr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APZ00_21695
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ALV29333
UniProt:
A0A0U3PCB0
LinkDB
All DBs
Position
complement(4758561..4762697)
Genome browser
AA seq
1378 aa
AA seq
DB search
MTLTFNGRKRVRKFFGSIRDVTEMPNLIEVQKASYDQFLQVEEPKGGRPDEGLQAVFNSV
FPISDFAGTALLEFVKFEFEQPKYDVEECRQRSMTFAAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVYMGDIPFMTENGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGLDGEEILNTFYQRIEYSRAG
KGSWRMPFDGDRLKGNKASYDLIDADTGEVVIEAGRKVTARTIKQLTEKGVKALKVTDED
LHGQYLAEDVVDFVTGEIYAEAGDEISAKLLDELIQRGYEDLTVLDIDHINTGAYVRNTL
AADKNESREDALFDIYRVMRPGEPPTLDSAEAMFQSLFFDAERYDLSAVGRVKMNMRLDL
TCPDTVRTLRKEDILAVIRLLLDLRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLRM
ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPY
RKVRDGIVSDEVVYLSAMEEAKHYVAQSNAVLDEGNRLVEELVTCRHAGENMLVPSDRVD
LMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVARD
SGAAIGARRGGVVDQVDATRIVIRATEDLDPSKSGVDIYRLMKFQRSNQNTCINQRPLVR
VGDVISKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLSERIVSDDVFTSIH
LEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVKPGDILVGKITPKGE
SPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGVEKDERAMAIEREE
IERLAKDRDDEQAILDRNVYGRLAEMLLGKTAIAGPKGFKKDTNLTGDVLGEYPRSQWWQ
FAMDDEKFMSEVEALRGQYDESRKRLEQRFIDKVEKLQRGDELPPGVMKMVKVFVAVKRK
IQPGDKMAGRHGNKGVVSKINPNEDMPFLADGTHVDIVLNPLGVPSRMNVGQILETHLGW
ACAGMGRKIGELYDEYRKTGEIQALKGEIHELYGDNIKGDAVKRYDDESVLRLAEQLKKG
VSIATPVFDGAHEPDIVEMLDAAGLDASGQSTLYDGRTGETFDRKVTVGYIYMLKLHHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELQQSDLTAITDEPAADAAE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgaccctaacgttcaacggtcgcaagcgtgtccggaaattcttcggatcgatccgcgat
gtaacggaaatgcccaacctcatcgaggttcagaaggcatcctacgaccagttcctgcag
gttgaggagcccaagggcggccgtcccgatgaaggcctccaggcggtcttcaactctgtt
ttcccgatttccgattttgccggaacggccctgcttgaattcgtcaagttcgaattcgaa
cagcccaagtacgacgtcgaggagtgccgtcagcgcagcatgacctttgctgccccgctg
aaggtgactctgcgcctgatcgtgtttgatgtcgatgaagacaccggcgccaagtccgtc
aaggacatcaaggagcaggacgtctacatgggggacatccccttcatgaccgagaacggt
acgttcgtcgtgaacggcaccgagcgcgtcatcgtgtcccagatgcaccgttccccgggc
gtgttcttcgatcatgacaagggcaagacccattccagcggcaagctgctgtttgctgcc
cgcgtgatcccgtaccgcggttcctggctcgacatcgagttcgacgccaaggacatcgtc
tatgcgcgtatcgaccgccgccgcaagattccggtcacctccctgctgatggccctcggc
ctcgacggcgaagagatcctgaacaccttctaccagcgcatcgaatattcgcgcgcgggc
aagggttcctggcgcatgccgttcgacggcgaccgcctgaagggcaacaaggcctcctac
gatctcattgacgccgacaccggcgaagtcgtgatcgaagccggccgcaaggtcaccgca
cgcacgatcaagcagctcaccgaaaagggcgtcaaggccctgaaggtgaccgacgaagac
ctgcacggccagtatctggccgaggacgtcgtcgacttcgtgaccggcgagatctacgct
gaagccggtgacgagatcagcgccaagctgctcgacgaactgatccagcgcggctacgag
gacctgaccgttctcgatatcgaccacatcaacaccggcgcttatgtccgcaacacgctt
gctgcggacaagaacgagagccgtgaagatgcgctgttcgacatctaccgcgtgatgcgc
ccgggcgagccgcccactctggactccgctgaagcgatgttccagtcgctgttctttgac
gccgagcgttacgacctgtctgcggtcggccgcgtcaagatgaacatgcgccttgacctg
acctgcccggacaccgtgcgcaccctgcgcaaggaagacatcctggccgtgatccggctg
ctgctcgacctgcgcgacggtaagggcgagatcgacgacatcgacaacctcggcaaccgc
cgtgtgcgttcggtcggcgaactcatggagaaccagtaccgcgtcggcctgctgcgcatg
gaacgtgcgatcaaggagcgcatgagctctgtcgacatcgacacggtcatgccgcaggac
ctgatcaacgccaagccggcagccgctgccgtgcgtgagttcttcggctcctcgcagctc
agccagttcatggaccagaccaacccgctgtccgaagtgacgcacaagcgccgcctgtcg
gctcttggaccgggcggtctaacgcgtgagcgcgccggcttcgaagtccgcgacgtgcat
ccgacccactatggccgtatctgcccgatcgagacgccggaaggcccgaacatcggtctg
atcaactcgctggcgaccttcgcccgcgtgaacaagtacggctttatcgagagcccgtac
cgcaaggtgcgcgatggcatcgtctccgacgaagtcgtctatctctcggccatggaagaa
gccaagcactacgtcgcccagtccaacgctgtcctcgacgagggcaaccgtctggtggaa
gagttggtcacctgccgtcatgccggtgaaaacatgctcgttccgtccgaccgcgtggac
ctgatggacgtgtcgccgaagcagctggtttcggtcgctgccgcgctcattccgttcctg
gaaaacgacgacgccaaccgcgcgctcatgggctcgaacatgcagcgtcaggccgtgccg
ctggtgcgcgccgaagcgccgttcgtcggtaccggcatggagccgatcgtggcccgtgac
tccggcgcggccatcggtgcccgccgcggcggtgtggtcgatcaggtggatgcgacccgt
atcgttatccgcgccacggaagatctcgatccgtccaagtcgggcgtcgacatctaccgc
ctgatgaagttccagcgttccaaccagaacacctgtatcaaccagcgtccgctggtccgc
gtcggtgacgtcatctccaagggtgatatcatcgctgacggcccgtcgacggatctgggc
gatctggccctcggccgcaacgtgctcgtcgcgttcatgccgtggaacggctacaacttc
gaggactccatcctcctgtccgaacgcatcgtgtccgatgacgtcttcacctcgatccat
ctggaagagtttgaagtcgccgcccgtgacaccaagctcggaccggaagaaatcacgcgc
gacattccgaacgtctcggaagaagcgctgaagaacctcgacgaagccggcatcgtctac
atcggcgccgaagtgaagccgggcgacattctcgtcggcaagatcacgccgaagggcgaa
agcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcttcggac
gtccgcgacacctccctgcgtctgccgcccggcgttgccggtacggtcgtggaagtgcgc
gtgttcaaccgtcacggcgtcgagaaggacgagcgtgcgatggccatcgagcgcgaggaa
atcgagcgcctggccaaggaccgcgacgacgagcaggcaatccttgaccgcaacgtctat
ggccgtctggccgagatgctgctgggcaagaccgccattgccggcccgaagggcttcaag
aaggacaccaacctgaccggtgatgtccttggcgaatacccgcgttcgcagtggtggcag
tttgccatggacgatgaaaagttcatgagcgaagtggaagctctgcgtggccagtatgac
gaaagccgcaagcgcctcgagcagcgtttcatcgacaaggtggagaagctgcagcgcggt
gacgagctgccccctggcgtcatgaagatggtcaaggtcttcgtcgccgtgaagcgcaag
atccagccgggcgacaagatggccggccgtcacggcaacaagggcgtggtctccaagatc
aacccgaacgaggacatgccgttcctggcggacggcacgcatgtcgacatcgtgctcaac
ccgctgggcgtgccgtcgcgcatgaacgtgggccagatcctcgagacccaccttggctgg
gcctgcgcaggcatgggccgcaagatcggcgagctctatgatgagtaccgcaagacgggt
gagatccaggctctgaagggcgagatccacgaactctacggcgacaacatcaagggtgat
gcggtcaagcgttacgatgacgagagcgtcctgcgtcttgccgaacagctgaagaagggc
gtttcgattgcaacgccggtcttcgacggcgcgcatgagccggacatcgtggagatgctc
gacgcagctggccttgacgccagcggccagtcgaccctctacgacgggcggacgggtgaa
accttcgaccgcaaggtcaccgtgggttacatctacatgctcaagctgcaccacctcgtg
gacgacaagatccacgcccgttcgattggaccttactcgctcgtgacccagcagccgctg
ggtggcaaggcgcagttcggcggccagcgcttcggtgaaatggaggtgtgggcccttgaa
gcatatggcgctgcctacacgctgcaggaaatgctgaccgtgaagtcggacgacgtcgcg
ggccgcacgaaggtctacgaggcaattgtccgtggtgatgacacgttcgaggccggcatt
ccggagagcttcaacgttctcgtgaaggaaatgcggtcgctgggtctcaacgtggaactt
cagcagtctgaccttaccgcaattaccgacgagcccgcggcagacgcggcagagtga
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