Pannonibacter phragmitetus: APZ00_22115
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Entry
APZ00_22115 CDS
T04214
Name
(GenBank) DNA-directed RNA polymerase subunit omega
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
pphr
Pannonibacter phragmitetus
Pathway
pphr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APZ00_22115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphr03021
]
APZ00_22115
03400 DNA repair and recombination proteins [BR:
pphr03400
]
APZ00_22115
Enzymes [BR:
pphr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APZ00_22115
Transcription machinery [BR:
pphr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APZ00_22115
DNA repair and recombination proteins [BR:
pphr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APZ00_22115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
MinE
Motif
Other DBs
NCBI-ProteinID:
ALV29404
UniProt:
A0A0L0J6L7
LinkDB
All DBs
Position
4840911..4841309
Genome browser
AA seq
132 aa
AA seq
DB search
MARVTVEDCIDKVDNRFELVLLAAHRARMISSGSPLTIDRDNDKNPVVALREIADETVSP
EDLKEDLIHSLQKYVEVDEPEAEAVPLVPSSNSGGTQVNAVDDSNVEFDRMSEEDLLRGL
EGLVPPERSDDI
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgtgaccgtcgaggattgcatcgacaaggttgataaccggttcgagctggtg
ctgctggcagcacatcgcgcccggatgatctcaagcggttcgccgctgaccatcgatcgc
gacaacgacaagaatccggtcgtcgccctgcgagaaatcgcagatgagacggtgagcccg
gaagatcttaaggaagacctcattcattctctgcagaaatatgtggaagtggatgagccg
gaggcggaagccgtaccgctcgttccgtccagcaattctggcggcacccaggtcaatgcg
gtagacgattcgaacgttgagttcgaccgcatgtcggaagaagatctgctgcgcggtctg
gaaggccttgtgccgccggagcgttcggacgacatctga
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