Candidatus Phytoplasma australasiaticum subsp. australasiaticum: H7685_000995
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Entry
H7685_000995 CDS
T09447
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pphs
Candidatus Phytoplasma australasiaticum subsp. australasiaticum
Brite
KEGG Orthology (KO) [BR:
pphs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphs03032
]
H7685_000995 (topA)
03400 DNA repair and recombination proteins [BR:
pphs03400
]
H7685_000995 (topA)
Enzymes [BR:
pphs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H7685_000995 (topA)
DNA replication proteins [BR:
pphs03032
]
Prokaryotic type
DNA Topoisomerases
H7685_000995 (topA)
DNA repair and recombination proteins [BR:
pphs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H7685_000995 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
UQV26919
LinkDB
All DBs
Position
complement(209447..211426)
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AA seq
659 aa
AA seq
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MKSQVIIVESPSKAKTISSFFDHKILVLSSKGHIRNLSLKGNDNLGIDIDNNFKPDYCII
KGKEKLVQNLISKTKDKHVFIATDFDREGEAIAWHLAQVLKLKPLDKNRIFFSEINKNVV
IKAFNNPVTINKRLVESQETRLILDKIIGFKLSSLVRRIRSKSAGRVQSVALKLVAEREK
EHNDFIPEEYYLIKAIFENFTANLIINPKNPKIKLEEANQILNQLKNKKFYLKDIIKTKN
LNKPPKPFITATLQQESFKYLGMNARKTMIIAQKLYEGVKIDQEIIGLITYMRTDSYRMS
EEFVENAQSFISEKFGSSYVNDIKLKNLSKKRIEAHEAIRITDIKKTPQQIKSYLNKDEF
SLYNLIYQKTISSLMSAAVINKTQFIFEIEKYLFQVEGYQMIFDGYLKTSVYSNFKEILL
PDWQKHQYYLPQKVIAKSQMTLPPPRYNEASLIKHLENLKIGRPSTYSHIIETLKNRYYV
NIKDKKMICTQRGLMTNELLIKFFNSFINIEYTAYMEEQLDNIANGQVDKITILNKFYDD
FIKLFINANNNIKVMKNITTQKKCTICGDFMVERYSKYGVFLGCNAYPKCKNSDIDQKKS
IILTNQNCSSCGSLMAERNGKYGKFLGCSTYPKCKQIISFNKNNKSENKKEEKEKLSQK
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcacaagtaattattgtagaatcaccttctaaagctaaaactatcagtagtttt
tttgatcataaaattttagttttatcttcaaaaggacatatacgtaatttatctttaaaa
ggtaatgataatttaggtattgatattgataataattttaaacctgattattgcattatt
aaaggtaaagaaaagttagttcaaaatttaatttccaaaactaaagataaacatgtattt
atagctactgattttgatagagaaggcgaagctattgcatggcatttagctcaagtttta
aaattaaaaccgttagataaaaatagaattttttttagtgaaatcaataaaaatgttgtt
attaaagcttttaataatcctgtaacgattaataaacgtttagtagaatcacaagaaact
cgacttattttagataaaataattgggtttaaattatcttctttagttagacgtattcgt
tctaaatcggcagggcgtgttcaatcagtagctttaaaacttgttgctgaacgcgaaaaa
gaacataatgatttcattcccgaagaatattatttaattaaagctatttttgaaaatttt
acagctaatttaattattaatcccaaaaatcctaaaattaaacttgaagaagctaatcaa
attttaaatcagttaaaaaataaaaaattttatttaaaagatataataaaaactaaaaat
ttaaataaacctccgaagccatttattactgctactttacaacaagaatcttttaaatat
ttaggtatgaatgctcgtaaaactatgatcattgcgcaaaaactttatgaaggagttaaa
atagatcaggaaataatcggattaattacttatatgagaaccgactcttatcgtatgtcc
gaggaatttgttgaaaatgctcaaagttttattagcgaaaaatttggttcttcttacgta
aatgatataaaattaaaaaatttatctaaaaaacgtatagaagctcatgaagctattcgc
attactgatataaaaaaaactcctcaacaaattaagtcttatttaaataaagatgaattt
tctttatataatttaatttatcaaaaaactatatctagtttaatgagtgcagcagttatt
aataaaacacagtttatttttgaaatcgaaaaatatttatttcaagttgaaggttatcaa
atgatattcgatggttatttaaaaactagtgtttattctaattttaaagaaatattatta
cctgattggcaaaagcatcaatattatttacctcaaaaagttatagctaaatcccaaatg
actttaccgccgcctcgttataacgaagcttctttaattaaacatttagaaaatttaaaa
ataggcagaccttcaacttattctcacattattgaaactttaaaaaatagatattatgta
aatattaaagataagaaaatgatttgtactcaacgaggattaatgacgaatgaactttta
ataaaattttttaattcttttattaatatcgaatatacagcttatatggaagaacaatta
gataatatagctaatggtcaagtagataaaataactattttaaataaattttatgatgat
tttattaaattatttataaatgctaataataatattaaagttatgaaaaatattacaaca
caaaaaaaatgtactatttgtggagattttatggtagaacgttacagtaaatatggtgtc
tttttaggatgcaatgcttatcctaagtgtaaaaattccgatattgatcaaaaaaaatct
ataattttaacaaatcaaaattgctcctcttgtggatctttaatggcagaaaggaatggg
aaatatggtaaatttttaggttgtagcacttatccgaagtgtaaacaaattatctctttt
aataaaaataataaatcagaaaataaaaaagaagagaaagaaaaattatctcaaaaataa
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