Candidatus Pelagisphaera phototrophica: GA004_00525
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Entry
GA004_00525 CDS
T09061
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GA004_00525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppht03019
]
GA004_00525
Enzymes [BR:
ppht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GA004_00525
Messenger RNA biogenesis [BR:
ppht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GA004_00525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_19
P-loop_SecA
AAA_22
Flavi_DEAD
NNMT_PNMT_TEMT
Motif
Other DBs
NCBI-ProteinID:
QXD32248
LinkDB
All DBs
Position
complement(105634..106830)
Genome browser
AA seq
398 aa
AA seq
DB search
MPFNGLGLSDSLLQSIGELGFEKPTPVQAKAIPLILQGKDIIASAQTGTGKTAAFGLPTL
DLLEPGKRIQCLVLEPTRELAQQVVDALESYSKHSKTRVGVVYGGVKYGRQKEMLEKGVD
ILVATPGRLLDHIGQGNISLKNVQVLILDEVDRMLDMGFLPDVSRLIKMCPKERQTLFFS
ATIPAAIQSMMKWVLNDPEVIEIGRNRSAAETVTHAFYPVVEQQKYDLLIKLLEQTQFES
VLIFTRTKLNADLISRRLERLKHSVGVLHSDRAQGERTAALKGFKSGKFEVLVATDIAAR
GLDIAGVTHVINYDVPLNAEDYVHRIGRTGRAEKEGDAFTLLTEDELKNAGAIEHYVGKK
IARKKIEGFNYMYSRLFEEEEKNASRKAKSRAYGRLSR
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgccctttaacggtctaggcctttcagattctctattacaatcaattggtgaactcggg
ttcgagaaaccaacacccgtacaagcgaaagcgatccccttgatccttcaggggaaagac
attatcgcatctgcacagacaggaacgggaaaaacagctgcatttggactgccaacactc
gatctgcttgagccgggtaaacgcatccaatgtttagtactcgagccgactcgagagctg
gctcagcaggtggtagacgcattggaaagctattctaaacactcaaagactagagtggga
gtagtttatggaggcgtaaagtacgggcgtcagaaggagatgctcgagaaaggagtggat
attctcgtcgctacgccagggcgattgttagaccacataggtcaagggaatatttcgttg
aaaaatgttcaggtgctgattttagacgaggtcgaccgaatgctggacatgggttttcta
ccggatgtgagccgcctcatcaagatgtgcccgaaggaaaggcaaaccctgtttttctct
gcgaccattccagcggcgattcaatcgatgatgaaatgggttctgaacgatccggaagtg
atcgagattggacgaaaccgttcggctgcggaaacggtgacccacgcgttctaccccgtc
gtggagcagcaaaagtacgatttgttgatcaagctgctagagcagacgcaatttgagagc
gtgttgattttcacccgaacgaaactgaacgctgacctaatttcaaggcgtttagagcgg
ctgaaacactcagttggggtgctgcattcggaccgggcgcagggtgagcgcacagcggca
ttaaaggggtttaagtcgggtaagttcgaagtcttggtggcaactgatatcgctgcccgc
ggtctagatatcgcgggggtgacacatgtcatcaattacgatgtgcccttaaacgccgag
gattatgttcaccgaattggtcgaactggccgtgcagaaaaggaaggggatgccttcacg
ctattgactgaggacgaattgaaaaacgccggtgcgatcgagcattatgtggggaaaaaa
atagcgcgaaagaaaattgagggcttcaattacatgtattcgcgtttgtttgaggaggaa
gagaagaacgcgtctcgcaaagcgaagagtagggcttacggccgcctttcacggtag
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