Candidatus Pelagisphaera phototrophica: GA004_01405
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Entry
GA004_01405 CDS
T09061
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
ppht
Candidatus Pelagisphaera phototrophica
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_01405
DNA repair and recombination proteins [BR:
ppht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
GA004_01405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
Zn_Ribbon_1
DUF7577
AAA_16
DZR
Zn_ribbon_RanBP
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QXD32411
LinkDB
All DBs
Position
278769..280505
Genome browser
AA seq
578 aa
AA seq
DB search
MYKLRTYQQEAVDRTLYHFRRQRTPAVIVLPTGAGKSLVIAELAKIAKGRVLILAHVKEL
VEQNHLKYESYGLQAGVYSAGLNQKDRGRKVIFGSIQSVANADDDFFKDFTLLVIDECHR
AGLEPDSQYAKVIKRLKQNNERICILGLTATPFRLGIGWIYNYAIRGELKTQEMRFFKQC
IYDLPLEYMIRNQYLTPPVKVDIPVTSYDFSELTEGGITYTMAQLEEVLHQQRRLTPLII
KNIIDITDSYKRQGVMIFSSTVKHAQEVMESLPKGQARLVLGETEASERDQIIDDFKRRA
FKYLVNVSVLTTGFDAAHVDVIAILRPTESISLYQQIIGRGLRLDTDKKDCLVLDYTGMG
YNIFSPEVGEKKTVSESVAVQVPCPECGFVNDFWGIVDFDGNIIEHFGRKCRGGHHNPDT
YEFRPCGYRFRFKVCDQCSAQNDLTARECRRCGNILIDPDTKLKQARLSKNAHVLTPDSI
EMLERFDKNGTPYLQVKYYDYDARHLAEIHYLDNQTSLKKFNVNFLRSHLKRPEMTLNIH
SVSEVVEMQSQIRMPAFLIGRKQGKFWKITEKIFREEL
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgtacaaactcaggacctaccaacaggaagcggttgatcgcaccctttaccactttcgg
aggcaacggaccccagcggtcatcgttttgcctacgggggcagggaagagtttggtaatc
gctgaattggccaaaattgctaaggggcgagtcctcatactcgctcacgtcaaagagctg
gtcgagcaaaatcacttgaagtacgagagctatggtttgcaagcgggggtctattccgcg
ggcttgaatcaaaaggaccgcgggaggaaggtgatcttcggcagcatccagtccgtcgcg
aatgcggacgacgacttctttaaggactttacgctcctcgtgatcgatgagtgccaccgc
gccgggctggagcctgacagtcagtacgctaaggtaatcaaacggctgaagcagaacaat
gagcgtatttgtattttgggccttaccgccaccccttttcggctaggaatcggatggatc
tataactacgcgatccgtggagagttgaagacgcaggaaatgcgcttctttaagcaatgc
atctacgacctaccccttgagtacatgatacggaaccaataccttacgcctccagttaag
gtagatattccagtgacgtcgtatgacttctctgagctgactgaagggggcattacctat
acgatggcccaactggaggaagtgctccatcagcaaagacgcctgacgcccctgattatc
aaaaatatcattgatatcaccgatagctacaagcgtcagggcgtgatgatctttagctcc
acggtgaaacatgcccaagaggtgatggagagccttccgaagggacaggcgcggctcgtc
ctgggagaaactgaggccagcgagcgggatcagattatcgatgatttcaagaggagagcg
tttaagtatttagtcaatgtatctgtcctgacaaccgggttcgatgccgcccatgtcgat
gtgatcgctattctacgtcccacagagtcgattagcttgtatcagcaaatcatcggccgt
ggtttacgtttggatacggataaaaaagattgtctagtcttagactataccggaatgggg
tataacattttcagcccagaggttggcgaaaagaaaaccgtatccgaatcggtcgccgtg
caggtgccctgccctgaatgcggtttcgtgaatgacttttggggtatcgtcgactttgat
ggaaatatcatcgagcacttcggtcgcaagtgtcgcggcgggcatcacaatccggatacc
tacgagtttaggccctgtggatatcggtttcgctttaaggtctgcgaccagtgctcagct
caaaacgacctcactgctcgcgagtgccgcagatgcggcaatatactgattgatcctgac
acaaaactgaaacaggccaggctttcaaaaaacgctcacgtgcttacgccagattcgatc
gagatgctcgagcgcttcgacaaaaacgggaccccctacctacaggtaaagtactacgac
tatgatgcgcgacacctagcggagattcattacctcgacaatcaaaccagccttaagaag
tttaatgtcaatttcttgagatcgcatctaaaacggcccgaaatgaccctcaacatccat
tcggtcagcgaagtagttgaaatgcaatcacagatcaggatgcctgcctttttaattggt
cgcaagcagggcaagttctggaagattactgaaaaaatattccgcgaggaactttaa
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