Candidatus Pelagisphaera phototrophica: GA004_02995
Help
Entry
GA004_02995 CDS
T09061
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppht03019
]
GA004_02995 (hrpA)
Enzymes [BR:
ppht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GA004_02995 (hrpA)
Messenger RNA biogenesis [BR:
ppht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GA004_02995 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
AAA_19
ResIII
SRP54
AAA_22
Helicase_RecD
nSTAND3
Flavi_DEAD
T2SSE
Motif
Other DBs
NCBI-ProteinID:
QXD32706
LinkDB
All DBs
Position
complement(646618..650562)
Genome browser
AA seq
1314 aa
AA seq
DB search
MEERRQPRRKIAKRASWNPSKILYPQDLPISKRRDDIIAAIQKYPAIILSGETGSGKTTQ
IPKMCIDAGRGRTKRIACTQPRRVAALSIAKRVSEELNVEYGKEVGCKIRFADTTSPQTR
IKFMTDGMLLAEIQSDPLMREYDTIIIDEAHERSLNIDFLLGHLNQLRMKRPDLKVIITS
ATIDTDKFSQSFENAPIIEVSGRVYPVDIIYAPLEELLDDEEEYTFLNGITESVDRIIEE
FGHGDILAFLPTEKDIRETKKRLEGRLGNLCSVLPCFGRLSNADQQQIFAQLSRRKIVLA
TNIAETSLTIPGIRFVIDTGLARISRYNPRARTKRLPIEKVSQSSANQRAGRCGRVQDGI
CIRLYSETDFLKRSEFSTPEIQRSNLAEVILKMMASRLGEIESFPFIDPPSIAAIRSGFA
LLEELGAIDSEYRLTKLGSKLAKLPIDPTAGRMLLQAEKEGVLEQILIIASALTIPDPRE
RPLGKEEQARIAQSEFIHKQSDFLTLLNIWEALQSGSDRISQSKLRKFCRSHYISYLRIR
EWRDVKDQLAQAIREFDRTDKSKSQSTHYKDENEKQRLREYGGSEYRSIHHCLAAGLLAN
PARKDEPNFYRSTGDRKIMIFPGSGLFNKKAQFAKSKKQKQVIEGRVSSPEWILAGEIVE
TNRLYARTVAVIDPTWLVLMGEHILKYSYSQPSFETDKGRVVCRESIRIHGLELQRKTVS
YLKVDPTKATEIFIREGLLNEDVEISRNLSFLEVNRKLKNRMQNAQTIAKMQSWIGIEEA
AFQFYSSRLKNIASIGDLNGYLKINGSNRLEMTESDLTLRTEDTIDLSAFPESVEFENTA
LPIEYNYKPGKKGDGVTLNIPYSKADSLNSPLLDWLVPGHLESKVHYLLKGLPKDLRRKL
QPLAETAKDISRNLVPNEQSLCECLSSHLRSSYGIETYYSDWKEDGIPEHLRVRIRVHDS
KGNTVLEDRSAKSIREKIRSRESSTTHHNSNRNNSLWEAALRKWSRTIESVDDLESQPEK
RKIGEINGLPLFAYPTLRQQGDVIKLTLLKSFEESKTANSLGIEQLIKHELRRELAWTRE
DLKDFSKLGPTAIAFAPLDKLKEQAYSHIKKHLCTHNINTISVADIQNKIESAKSQSRGL
VYKLIDLLQEILSTRQELKVRKDLPTDLDREIDRLLPTDFLEKTPHWALNRLPIYLQSLL
VRLQSRIRDPERDAARQGEIDRLRNQLAASKVGSSQYSDIAWSIEEYALSLFAQSLGTAF
PVSEKRILQKLRQAPEEDPSKPSNSATTSTKPNRAIDRPTSSDLESLKSLFGKR
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaggcggcaaccaaggcgtaaaatagcgaaacgagcttcctggaatcccagc
aagatcctctatccacaagatctgcccatctccaagagacgggatgacattattgccgcg
attcagaaatacccagcgattattctatcgggtgaaactggttccggcaagacaacgcag
attcctaagatgtgtatcgatgcgggtagaggtcgaaccaaacggattgcgtgtactcaa
ccgcgccgcgtcgctgccctatcaatcgccaaacgcgtttcagaagaattgaatgtcgaa
tacggaaaggaggttgggtgtaaaattcgattcgccgacacaacaagtcctcaaactcga
atcaagtttatgaccgatggtatgctgctggcagagattcagtcagatccgcttatgcgt
gaatacgataccatcatcatcgacgaagctcatgaacgaagcctcaatatcgattttcta
cttgggcatctcaatcaactacgaatgaaacgtccggacctcaaagtgattattacttcc
gcgacgatcgataccgacaagttttctcagagcttcgaaaacgccccgatcattgaagtc
tctggtagagtttatcccgtcgatatcatatatgctcccttggaagagcttctggatgat
gaggaagaatacaccttcctcaacggaattacagaatcggttgatcgaatcatagaggaa
ttcggccacggcgatatcctcgcattcctcccgaccgagaaggatattagggagacgaag
aaacgcttagagggacggttgggaaatctctgttcagttcttccctgctttggacggctc
tccaatgccgaccagcaacagatattcgcccaactatcccgtcggaaaatcgttctggcg
accaatatcgccgaaacgtcgctaaccattccgggtattcgttttgtcatagataccgga
ctagctcggatcagtcgctacaacccacgagcccggaccaaacgactgccgattgaaaag
gtctcgcaaagcagtgccaaccagcgagcaggacgttgtggacgcgttcaagacgggatc
tgtatccggctgtattcagaaactgacttcttaaaacggtccgagttttcaactccagag
atccaaagatcgaatctggccgaggtgatcctgaagatgatggcctctcgacttggggaa
atcgagtcattccccttcatcgatcctccgagcatcgctgccattcggtccggttttgcc
ctactcgaagaattgggtgccattgactccgagtacagacttactaaattgggaagcaag
ctggcaaagcttccaatcgaccccacagcgggtcgcatgttgctacaggcagaaaaggag
ggagtgcttgagcaaattcttatcatcgcatctgcgctcacaatccccgatccccgggaa
cggcccctcgggaaagaagagcaggctagaatcgctcaaagcgaatttatccacaagcaa
tcagactttctgacgcttctcaatatttgggaggctctccaatcaggctccgatagaata
tcacagagtaagcttcgcaagttttgcagatcgcactatatttcctatttgcgaattcga
gagtggagagatgtcaaagaccaactcgcccaggcgattcgggaatttgatcgtaccgat
aaaagcaaatcccaatcgacccactacaaagacgaaaatgagaaacaacgattgagggag
tatggcggcagtgagtatcgctccattcatcactgcctagcggccggtctcctcgcaaat
cctgcccgcaaagatgaacccaacttctatcgatctacaggtgacaggaaaatcatgatc
tttcctggctcgggactgtttaacaaaaaggcccaattcgcgaaatcgaaaaagcaaaaa
caagtaatcgaaggaagggtatcctcaccagagtggattcttgctggggaaatcgtggaa
accaatcgcctctacgcacgcacggtcgcggtgatcgatccgacctggctcgtgctcatg
ggcgagcatattctcaagtacagctatagccagcccagctttgagaccgacaaaggaaga
gtcgtatgtcgggagagtattcgtatccatggtttggaattgcagcgcaaaacggtatcc
tacctcaaggtggatcccactaaagcaacagagatctttatccgtgaaggtttgttgaac
gaagatgttgagatatctcggaacctcagttttctcgaagtgaatcgaaaattgaagaac
cggatgcagaacgcccaaaccatcgctaaaatgcagagctggattggtatcgaagaagca
gcattccaattctattcgagccggttaaaaaatatagcttcgattggcgatctcaatggc
tacctaaagatcaacggttcgaaccgtcttgagatgacggagtccgatttgactctacga
actgaagacacgatcgacctgtctgctttccccgaatccgttgagtttgagaacactgct
ttgccaatagagtataactacaagccgggcaaaaaaggtgacggtgttacactcaatatc
ccctactccaaagctgatagcctaaacagtccactgctcgactggctcgttcctggtcat
ttagaatccaaagttcactatctattgaaaggacttcccaaggatctgaggagaaagttg
caaccattagcggaaaccgcaaaagacatttctaggaatctagtgccgaatgagcaaagt
ctgtgcgagtgcctgtcttcccatcttagatcttcatacggtatcgaaacgtattatagc
gattggaaggaagatggtattccggaacatctacgagtgcgaattcgagtacacgacagc
aaaggcaacacggtcctggaagatcgttcagccaaatccattcgagagaaaatcagatct
cgcgaatcatctacgactcatcataattcgaacagaaacaactcactttgggaggccgct
ctaagaaaatggtctcgtaccatcgaatcagttgacgatctggaatcacaaccagaaaaa
aggaagataggcgaaatcaatggcctaccactatttgcctatcccactttgcgtcaacaa
ggtgatgtcataaagctcaccctactgaagtcatttgaggaatctaagactgcaaattca
ttagggatagaacagctcattaaacatgaactgcgaagagaacttgcctggactcgcgaa
gatttaaaagacttttccaaactaggacccaccgctatcgcattcgcccctctcgacaag
ctcaaggaacaggcatactcgcatatcaagaagcacctatgcacccacaatataaatacc
atctctgtcgctgatattcagaataaaattgaatccgcgaaatcccaatctcgaggtctc
gtatacaagctgattgatctgttgcaagagatcctaagtactcgtcaagaactaaaggtc
aggaaagatcttcccaccgatttggatcgtgaaattgatcgacttcttccaaccgacttc
cttgaaaaaacccctcattgggccctcaatcgcctacccatttatctacagtcgttactt
gtgcgtctacaatcccgaatacgggatcccgaaagagacgccgcccgccaaggggaaata
gatagattgcgaaaccaactagcggcctccaaggtaggatcttctcaatacagcgacatc
gcatggtcgatcgaggaatacgcattgtcactttttgcccaatccctcggaaccgctttc
cctgtttcggaaaaacgaattctgcaaaaactgaggcaggcccctgaggaagacccgtct
aaaccaagcaattctgcgaccacttcaacaaaacctaaccgtgccatcgaccgaccaacc
agttctgacctggaaagcctcaaatcgctttttggaaagcgctga
DBGET
integrated database retrieval system
