Candidatus Pelagisphaera phototrophica: GA004_04000
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Entry
GA004_04000 CDS
T09061
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GA004_04000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppht03019
]
GA004_04000
03009 Ribosome biogenesis [BR:
ppht03009
]
GA004_04000
Enzymes [BR:
ppht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GA004_04000
Messenger RNA biogenesis [BR:
ppht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GA004_04000
Ribosome biogenesis [BR:
ppht03009
]
Prokaryotic type
rRNA helicases
GA004_04000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AroM
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QXD32888
LinkDB
All DBs
Position
885933..887762
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AA seq
609 aa
AA seq
DB search
MSEDKDNIQVFNDLGLSDSVMKGLVEIGYESPSPIQAAIIPYVLQGRDVIGQAQTGTGKT
AAFALPLLSKIDFSITKKPQVIVLTPTRELAIQVAEAFQKYAAKLKNFHVIPIYGGTDFR
AQLRQLNRGVHVIVGTPGRVMDHMRRETLDLGALSCVVLDEADEMLRMGFIDDVDWIMER
TPAGRQVALFSATVPAPIKRIAQRHLNDPVEIKIKTTTSTAETIRQRYWMVSGLHKLDAL
TRVLEGEEFDAMIIFVRTKLATAELTERLQARGFAAAPLSGDIPQAKREKTINRLKTGKL
DILIATDVAARGLDVDRVSHVVNYDIPYDNESYIHRIGRTGRAGRAGDAILFVTPREKRL
LKSIERTTNKKIELMEMPTTQDINDKRIEKFKTKITEVLDQNGLDFFKDIIEQYRQEHDV
PSSEIAAALAKIAQGDSPLLLSERKAVRQERNDDREPRERRSGIGGDSESPPPRRDKSEY
KRMPPETGTERFRIEVGYTHGVKPGNIVGAISNEAGLDSKFIGRIELYEDYSTVDLPEGM
PREVVQILKKAWVSGQQMRISRMDVSSKKNKENKNRDFDREARAGSSGRPARAKSGKPPF
KKRRAGRDV
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagacaaagataacatacaggttttcaatgatttaggactttccgattcggtg
atgaaagggttggttgaaattggctacgaatcgccctcgccaatccaagcggcgattatt
ccgtatgtgctccaagggcgcgatgtgattggacaggcccaaacagggactggaaaaaca
gccgcatttgcccttcctctcctttcgaagattgatttttcgattacgaaaaagccgcag
gtaatcgtactgacaccgactcgggagctcgccatccaggtggcagaagcgtttcaaaag
tacgcggcaaagctaaaaaatttccatgtaatcccaatctatggaggtacggactttcgt
gcccagttgcgacagttgaaccgcggagttcatgtcatagtcggcactccaggccgggtg
atggaccacatgcgccgtgagactctggatttgggagcactgtcttgcgtcgttcttgat
gaggcagacgagatgctccggatgggattcatcgatgatgttgactggattatggaacgg
actcctgcgggccgacaagtcgctctcttttccgcgacggtgccagctcctataaagcgg
attgcccagcgtcacctgaatgatcctgtcgagattaagatcaagacgacgacctcgacc
gctgagacgatccgccagcgctattggatggtgagtgggctccacaagctagatgctttg
actcgagttctcgaaggtgaggagtttgacgcgatgatcatatttgtccggaccaagctg
gctacggcggagttgaccgagcgccttcaggctagaggcttcgcggccgcgccactcagt
ggggacatccctcaggctaagcgcgaaaagacaatcaatcggcttaagacggggaagctg
gatatattgatcgccaccgatgtggcagcgcggggattggatgtcgatcgtgtgagccac
gtagtcaattacgacattccgtacgacaatgaatcctatatccatcggattggccgaaca
ggccgtgcgggccgtgcgggtgatgcgattctgtttgtgacaccgcgtgaaaagcgtctc
ttgaagtcgatagagcgaacgaccaacaagaagatcgagttgatggagatgccaactact
caggatatcaacgataaacgtatcgagaagtttaagacgaaaattacggaagtcctcgac
cagaatgggctggattttttcaaagacataatcgagcagtaccgtcaggaacacgatgtt
ccctcttcggaaattgcagcagcgttggcaaaaatcgctcaaggagattcgcctttgctg
ctatccgaacgaaaggctgtccgccaggaacggaacgacgaccgggaacctcgtgagcgg
cgttccggtattggcggagattcggaaagtcctcctcctcggcgcgataagagtgagtac
aagcggatgccccctgaaactgggacagagcgatttcgtatcgaggtgggttatacgcat
ggagtaaagccaggaaatatagtcggcgcgatttccaacgaggcgggactagacagcaaa
tttattggcaggatcgagctctacgaggactacagtacggttgatttgccagaaggaatg
ccgcgtgaagtggtccagattttgaagaaagcctgggtatcgggccagcaaatgcgtatt
tcgcggatggatgtttcgtccaagaaaaacaaggaaaacaaaaaccgggactttgataga
gaggctcgagctgggagcagtgggagacccgctcgcgcgaagagcggaaagccgccgttc
aaaaaacgtcgagcgggtcgcgatgtctaa
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