Candidatus Pelagisphaera phototrophica: GA004_05140
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Entry
GA004_05140 CDS
T09061
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GA004_05140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppht03019
]
GA004_05140
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_05140
Enzymes [BR:
ppht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GA004_05140
Messenger RNA biogenesis [BR:
ppht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GA004_05140
DNA repair and recombination proteins [BR:
ppht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GA004_05140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
MCM_bind
DprA_WH
Motif
Other DBs
NCBI-ProteinID:
QXD33096
LinkDB
All DBs
Position
complement(1161100..1163025)
Genome browser
AA seq
641 aa
AA seq
DB search
MNPLETLKTNFGFESFREGQETIITQILNGKSALAVFPTGSGKSLCYQLPALLLPGLTIV
ISPLIALMKDQVDFLRKRSISVARLDSSLTAEETRQVYQDLNSGSLKLLYVAPERISNER
FFASIEDVPISLMVIDEAHCISEWGHNFRPEYLKLAIAGRKLKVDRVLALTATATPTVVE
DIRREFAIPPEAYVNTGFHRPSLFLEFTPTPPSKRDETLKKKLAASPLGPTIVYVTLQKE
AERVAEFLTTAGFSARAYHAGMKSDKRSEIQDWFMASKDGIVVATIAFGMGIDKSDIRNV
YHFNLPKTLENYSQEIGRAGRDGLPSHCEVLGSAEDLIVLENFIYGDTPTEESIRDFGAF
ILSQKTEFDISLYQLSQQTDIRPLVLSTLLTYLELDGVIKFTAPFYSEYKFNYIVPKNEI
LDKFDPVRQKFLQGLFDQSVEKQKWSYINLDTAASNLGEDRNRIVKAFNYLEESGNLEVG
VSGLRQGLRLLERPLLEVVIQSLSEKVFRNETLNIERTQQVIELLNIESCKTSAVLKYFG
EDLGQPCGHCSYCQTSQTVPIRNPERALSDEELTQIGQILKQQPVGQKSPREYARFLCGI
SSPKLSRSRTTRDPLFGALDQVPFQAVMKAADERTSRKSVS
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctctcgaaacgctcaaaacgaacttcggcttcgagtcctttcgcgaagggcaa
gaaaccatcatcacccaaatcctgaatgggaaatccgccctcgccgtttttcctacggga
agtggcaaaagcctgtgctaccaattgcccgccctgttgcttcccggcctgacaatcgtt
atctcccccttgatcgctcttatgaaagatcaggtcgactttttgcggaagcgctcgatt
tccgtggcccgactcgattcgtccctcaccgccgaagaaacccgccaggtctaccaggac
ttgaacagtggatcgctcaaactcctctacgtcgcacccgagcgaatttccaacgaacgt
tttttcgcttccattgaagacgttcccatttctctaatggtcatcgacgaggcccattgc
atttccgaatggggacacaatttccgccccgagtacctcaagctggccatcgccggaaga
aagctgaaagtcgatcgagtcctcgccctgaccgctaccgcgacgcccactgtcgttgaa
gacattcgccgcgaattcgcgattcccccggaagcctacgtgaacaccggctttcatcgg
cccagcctgtttctagaattcacgccgacacctcccagcaagcgcgatgaaacgctcaaa
aagaaactcgccgcttcacccctgggaccgacgattgtttacgtaacattgcaaaaggaa
gcggaaagggtcgccgaattcctcaccacagcgggtttttcagcccgtgcctaccacgcc
ggaatgaaaagcgataagcgttccgaaatacaggactggttcatggcgtcaaaagacggg
atcgtcgtcgccaccatcgcctttggaatgggtatcgacaaatcggatattcggaacgtg
taccatttcaatttgcctaaaacacttgagaactactcccaggaaattggccgagctggc
cgcgacggcctaccctcccactgcgaagttctgggatccgcggaagacctaatcgtgttg
gagaatttcatctacggcgacaccccgacggaggaaagcatccgtgacttcggcgcattc
attctttcccaaaaaacggagttcgacatatcactctaccagctatcgcagcaaaccgat
attcgccccctcgttctaagcacattgctaacttatctggaactcgatggagtcataaag
tttaccgctcctttctatagcgaatataaattcaactacatcgttcccaaaaacgaaata
ctggataaattcgacccggttcgtcagaaattccttcaggggctattcgaccagtccgtc
gagaagcaaaagtggagctatataaatctggatactgccgcttcaaatcttggggaagac
cgaaaccgaatcgttaaggccttcaactacctggaagaaagcggaaacttggaagttggg
gtaagtggattgagacagggattgcgattgctggagcggcccctgcttgaggtcgtcatc
cagtccctttcggaaaaggtctttcgcaatgagactctcaatatcgaacgcacgcaacag
gtcatcgagctgctcaacatcgaatcgtgcaaaacgagtgctgtcttgaaatattttggg
gaggacctaggccaaccttgcggacattgcagttattgccaaacaagccagaccgtcccc
atccgcaaccccgagcgagctcttagcgacgaagaactgactcagatcggccagatactg
aaacaacagcccgtgggtcaaaaatctccacgagaatacgctcgttttctctgcggtata
tcctcccccaaacttagccgcagccgaaccactcgtgatccccttttcggtgccctggac
caagtccccttccaagcagtcatgaaagcggcagacgagcggacatcgaggaaatcagtg
tcctaa
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