Candidatus Pelagisphaera phototrophica: GA004_06235
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Entry
GA004_06235 CDS
T09061
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GA004_06235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_06235
Enzymes [BR:
ppht01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
GA004_06235
DNA repair and recombination proteins [BR:
ppht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GA004_06235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
QXD33301
LinkDB
All DBs
Position
1418216..1419136
Genome browser
AA seq
306 aa
AA seq
DB search
MRSQINSVVDELKRLRKEGQDRIYVSEESLRDLKLALGKIVAEDSEKEMESAVALIPDRI
RSATAEDFNRVLKEEPKTASKTSGDRKATLGIPPAFELPEGNKQKRWDALREIVLNCPKC
NENKREGYQLVFGVGSLDADIFFCGEAPGADEEEQGEPFVGKAGQLLDKMIGAMGLAREE
VYIGNIMNWRPQLPTRVGNRPPTIGEIEFCLPYLRAQIEVVKPKLIVALGATAAKGLLGS
KSFRSLREVKGEWREFEKTPLLATYHPSYLLRNDSKRDKRSAWEDLLKVMERCGLPISDR
QRGYFL
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgagatctcaaataaatagcgtcgttgatgagctgaaacgtttgcgaaaagagggacag
gatcgcatttatgtatcggaagagtccctacgcgacttgaaattggcgttagggaagatt
gtagcggaagattctgaaaaggaaatggagagtgcggttgctttgatacccgatagaata
cgttcggcaacagcggaagattttaaccgggttctcaaggaagaaccaaaaacggctagt
aaaacctctggtgatagaaaagctacccttggaataccacctgcatttgaattgccggaa
ggcaacaagcaaaagcgttgggacgcgttgcgggagatcgtactaaattgtccgaaatgc
aacgagaataagcgagagggctatcagctagtgtttggagtaggtagtttggatgctgat
atctttttttgtggcgaagctcccggagcagacgaagaagagcagggggagcctttcgtc
ggtaaagccggacagttgctcgataagatgattggcgccatggggcttgctcgtgaggaa
gtctatattggaaatatcatgaattggcgtccgcagcttcctacccgagtgggcaatcga
ccgccaacaatcggtgagattgaattttgcctcccatatttaagggctcagattgaggtc
gttaagccaaagctgatcgtggcgctaggtgcgactgcagcgaagggcttgcttgggtcg
aaatcgtttcgtagtttgagggaagtaaaaggggagtggagggaatttgaaaaaacacct
ttgctcgccacttatcatccttcgtatttgctccgaaacgacagcaagcgagataagcga
tctgcgtgggaagatctgctgaaggtgatggagcgttgcggcctaccgattagtgaccgg
cagcgagggtattttctctga
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