Candidatus Pelagisphaera phototrophica: GA004_06850
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Entry
GA004_06850 CDS
T09061
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GA004_06850 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppht03019
]
GA004_06850 (pnp)
03016 Transfer RNA biogenesis [BR:
ppht03016
]
GA004_06850 (pnp)
Enzymes [BR:
ppht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GA004_06850 (pnp)
Messenger RNA biogenesis [BR:
ppht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GA004_06850 (pnp)
Transfer RNA biogenesis [BR:
ppht03016
]
Prokaryotic type
tRNA degradation factors
GA004_06850 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
KH_2
Motif
Other DBs
NCBI-ProteinID:
QXD33418
LinkDB
All DBs
Position
complement(1556605..1558812)
Genome browser
AA seq
735 aa
AA seq
DB search
MIQKHSVTIDALNMTISTGDLAQLASGSVTVTVGETCVFVSATAASTVREGQDWFPLTVD
YREKYAAAGRIPGGYFKREARPTEKEILTSRLCDRPCRPLFPKGFLNEVQIIGFLLSTDK
TNEPDISMLNGASAALAISDIPWNGPIGAVRVGRIDGEFVTNPTLEEQYASELDLIYVGT
KTEMLMIEGSAAQLPEDDFIAALEYAHEAIQPIIAGIDKLVSIAGKEKSEFPLVVLNPEV
REFVENLIGEDVNAAARLGDKQERNAKMDALKEKAGGALKEKLGEESYNPAQLSMAMEEM
QEAAYRAPILESQVRSGGRGPTELRDLHSEVGLLPRVHGSALFSRGETQALVFATLGPTN
EAQRLDAVTGGPESKSFMLHYNFPPFSVGEAGRFGFTGRREIGHGALAERSLLPVVPAED
HFAYSIRIVSEVMASNGSTSMASICGGCLALMDAGVPISDPVAGISCGLVTENGSDGKIA
KHVLLTDILGEEDHFGDMDFKIAGTRNGITGFQLDLKINGLPFDIMRESVAQSRDARIAI
LDSMAEAIDKPRENVSENAPRITTVQINPEKIGALIGPGGKNIRRIVEITGAQLDIDDDN
SGKVNIYATSEEAMNRAIQEIDLVCGEIEEGKIYRGVVKAVKEFGCFVEVLPGQEGLVHI
SELADFRVKRTEDVCKPGDEMVVKCIGIDEKGRVRLSRKAALEELEARKAASSESEGEPE
ESDSSKEVETENAAE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgatacaaaaacatagtgtaacgatagatgctctaaacatgaccatctccactggagac
cttgcgcaactggcaagtggatccgtaactgtaaccgttggcgaaacctgtgtattcgtt
tccgccacggcggcgagcaccgtccgggaaggccaagactggtttcctcttactgtcgac
taccgcgaaaagtacgcagctgcggggcgcatccccggtggttatttcaagcgtgaagcc
cggcctaccgaaaaggaaattctaacttcccgcctttgcgaccgcccttgccgtccgctt
tttccaaaaggctttttgaatgaagtccaaatcattggcttccttctctcaacggacaag
acaaacgagcctgacatttctatgctcaacggagcatcggctgctctggccatttcagac
ataccttggaatggtcctatcggagctgtgcgtgttggacgtattgatggcgaattcgtc
acaaatccaactttggaagagcaatatgcttcagaactcgatcttatctatgtcggaact
aaaaccgagatgctgatgatcgaagggagcgctgctcaacttccggaagatgattttatc
gccgctcttgagtacgctcacgaagcgattcagccaattatcgctggcattgacaaactg
gtttcaatcgcaggcaaagaaaagtcggaattcccactcgtagtgctgaatcccgaagta
cgggaattcgttgaaaacctgattggtgaagacgttaacgccgcagctcgtcttggtgac
aagcaagaacgcaacgccaaaatggacgcacttaaagaaaaggctggcggtgctctcaaa
gaaaagctgggtgaagaaagctacaatcccgctcagctttcgatggcaatggaggaaatg
caggaagcggcctaccgggccccgattctcgaatctcaggtccgctccggcggacgcggt
cctacagaactccgcgatttgcatagtgaagtgggcctcctcccacgtgtacatggttcc
gccctattctcccgcggagaaacgcaagcgcttgtatttgcgacgcttggcccaacgaac
gaagcgcaaaggcttgatgcggtaacgggaggtccagaatccaagtcattcatgctgcac
tacaacttccctcctttttcggtaggagaagcaggtcgctttggttttacgggtcgacgc
gaaattgggcatggcgccctggctgaacgctctctgcttcccgtagttcctgcagaagat
cacttcgcctactcgattcgaatcgtttccgaggttatggcatcaaatggctccacgtcg
atggcttccatctgcggagggtgcttggctctcatggatgcaggagtacctatctcagac
cccgttgccgggatttcctgtgggctcgtaaccgagaacggatctgatggaaaaatcgct
aaacacgtacttctcaccgatattctaggtgaagaggaccactttggcgacatggacttc
aaaatcgctggtacccgcaacggaatcactggattccagctggacctcaaaatcaacggt
ctgcctttcgacatcatgcgtgagtcagtcgcccaatcgagagatgctcgcatcgctatt
cttgattccatggcggaagctatcgacaagccacgtgagaacgtcagcgaaaacgctccg
cggattaccacggttcaaattaaccccgaaaagataggtgctctcattggccctggcggc
aagaacatccgccgtatcgttgaaatcaccggagcacagctggacatcgatgacgacaac
agcggcaaggtgaatatctacgctactagcgaagaggcaatgaatcgcgctatccaggaa
atcgatctcgtttgcggcgaaatcgaggagggaaagatctaccgcggtgtagtcaaagcc
gttaaggaatttggctgctttgtagaggtattacccggtcaggaaggactggtacacatt
tccgagttggctgacttccgcgtcaagcgcaccgaggatgtatgcaagcctggcgacgaa
atggtggtcaaatgcattggcatcgacgagaaaggccgcgtacgccttagtcgtaaagca
gccctggaggaactcgaagcccgcaaagctgcttcaagcgaaagcgaaggggagccagaa
gaatcggactcaagcaaagaggtcgaaactgaaaatgctgctgaataa
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