Candidatus Pelagisphaera phototrophica: GA004_06880
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Entry
GA004_06880 CDS
T09061
Symbol
gcvP
Name
(GenBank) aminomethyl-transferring glycine dehydrogenase
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht00260
Glycine, serine and threonine metabolism
ppht00630
Glyoxylate and dicarboxylate metabolism
ppht00670
One carbon pool by folate
ppht00785
Lipoic acid metabolism
ppht01100
Metabolic pathways
ppht01110
Biosynthesis of secondary metabolites
ppht01200
Carbon metabolism
Module
ppht_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
GA004_06880 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
GA004_06880 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
GA004_06880 (gcvP)
00670 One carbon pool by folate
GA004_06880 (gcvP)
Enzymes [BR:
ppht01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
GA004_06880 (gcvP)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
GDC-P
GcvP2_C
Beta_elim_lyase
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
QXD33856
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All DBs
Position
complement(1562979..1565900)
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AA seq
973 aa
AA seq
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MPLMQKTSAMINPSSQELEKKDTFLRRHIGITDNEALKMVQTLGFDSLDSLINQTVPSNI
RISGIDGLPSPAGEHDMLAEIRTIASKNSSIKSLIGLGYSNTITPPPILRNILENPGWYT
QYTPYQAEISQGRMEALLNFQTMVSDLTGMDIANASLLDEGTAAAEAMTMAYGLNGRPKK
KAVLISSSCHPQTIEVVQTRAEPLGIATQVVDLSSQIELNDAFAIIIQYPDTFGIAEDFS
KLAMRASKNKALVIACCDLLSLTLLKPPGEFGADIAVGSAQRFGIPMGFGGPHAAFFATK
EAHKRKIPGRIIGVSKDSNGNPALRLALQTREQHIRRDKATSNICTAQVLLANIAAAYGI
YHGPTGLKAIAERIRKITLTSIHLLKEWGFLIADGERFDTITIQSPQAKTDDVMQSIENC
GFNVRKVSNDTIGLSFDETVSVDEAVSVLKAFDPVRSLTVDIFETAASSLTDSITPSLER
ASPFLEHEVFNKYQTETELLRYLKRLESKDLSLTTSMIPLGSCTMKLNAAAEMQPVTWPE
FSNVHPFAPSHQTTGYIELINQLETWLARITDFAAVSIQPNAGSQGEYAGLLVIREFHQS
QGHTNRDVCLIPNSAHGTNPASAVMAGMKVVPVSCDDLGNINVEDLEKKAELHRENLAAL
MITYPSTHGVFESSIQEICQIIHNNGGQVYMDGANMNAQCGLTSPGFIGADVCHLNLHKT
FCIPHGGGGPGVGPIGVAEHLKPFLPGHSLNSQVGGEKPIGAISAAPYGSAGILPISWAY
IRMMGSSGLTQATKIAILNANYMAKRLEAHFPIVYRSENGLVAHEFIIDFRQWKGLAGIE
VEDVAKRLMDYGFHAPTMSWPVPGTMMIEPTESECRDELDRLCDALISIKSEMERIANGD
WPQDDNPLKNAPHTSSRVVSDNWSSPYGRELAAFPTTWTRNCKYWPTVGRVDNVYGDRNL
VCSCVPMFEYESD
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgccactgatgcagaagacttccgccatgatcaacccatccagtcaagagctggaaaag
aaggataccttcctacgtcgccacatcgggatcaccgataacgaagctttaaaaatggtc
caaacgctcgggttcgattcgctcgattcgcttatcaatcaaacggttccttcaaacatc
cggatctcaggaatcgacggcctgcccagcccagctggtgagcatgacatgctcgctgaa
atcagaacgatcgcctccaaaaactcctccatcaaatcgctcattggtcttggatattct
aatacgatcacaccccctcctatcctaagaaacatcctggaaaacccaggctggtataca
caatacactccttaccaggccgagatttcccaaggccgaatggaagcgcttttgaatttc
cagacaatggtctcagaccttaccggaatggacatcgccaatgcctcccttttggacgaa
ggcactgctgcagcggaagcgatgacgatggcgtacgggctcaatggtcgacccaaaaag
aaggcagtgctcatttcgtcctcatgccatcctcaaacgattgaggtcgtgcaaacgaga
gctgaaccacttggcattgccacccaagtggtcgacctcagcagtcagatcgaactgaat
gatgcattcgcgattataatccagtatccagatacatttggaattgccgaggacttttca
aagctggccatgagagccagcaagaacaaagccctagttattgcgtgctgcgaccttctt
tcgcttaccttgctaaaacctcccggagaattcggggctgacattgctgtcgggtctgcc
caacgttttggaataccaatgggttttggcgggccgcatgcggcattctttgctaccaaa
gaagcccataaacgaaaaattcctggtcgtatcattggcgtatccaaggactcaaacggg
aaccccgcccttcggctagccttgcaaacgcgagaacaacatattcgcagggacaaggcg
actagcaacatttgcactgctcaagtccttctagcgaacatcgcagccgcatacggcatc
tatcatggtcccacaggactgaaggcgattgccgaacgtattcgcaaaataacgctcaca
tccattcacctactgaaagaatggggattcttaattgcagatggcgaacgttttgacaca
atcacgatacaatcccctcaagcaaaaacggacgatgttatgcaatccatcgagaattgc
gggtttaatgtaagaaaagtcagcaatgataccattggtctttcctttgacgaaacggtc
tcggtcgacgaagcagtatcggttctcaaagccttcgatcccgttcgctcgcttacggtt
gatattttcgaaaccgccgcttcctcccttacagattctataacaccctcgctcgaacgt
gcctcccccttcctcgagcacgaagtgttcaacaagtaccagacggaaacggaacttctt
cggtacctaaaacggctcgagagcaaagacttgtctttgacgacttcaatgatcccgctc
ggttcatgtacgatgaagctaaacgctgccgccgaaatgcaaccggtcacttggcccgag
tttagcaacgtacatccattcgctccctctcatcagacaactggatacattgagctcatc
aatcagcttgaaacctggctggctagaataacagatttcgccgcagtttccattcagccc
aacgcgggatcacaaggtgaatacgcaggactgctcgtcatcagagagtttcatcaaagc
cagggacataccaaccgagatgtttgcttaatccccaattcagctcacggcaccaatcca
gcgagcgctgtcatggctggcatgaaagtcgtgccggttagctgtgatgacttaggcaac
attaatgtggaggatttagagaaaaaggccgaactgcaccgcgaaaacttggcggcattg
atgatcacttacccatccacccatggcgtatttgaatcctctatacaggaaatttgccaa
attattcataacaatggcggacaggtctatatggacggagcgaacatgaacgcccaatgc
ggcctcactagtccgggatttattggagccgatgtctgccacctaaacctgcacaagaca
ttttgcattccccatggaggcggaggacctggagtgggaccgattggagtagcggagcac
ctcaagccatttcttcctgggcacagcctcaactcgcaagtgggaggagaaaagcccatc
ggagcgatttccgcagcgccctatggaagcgccggcatattaccgatatcctgggcgtac
attcggatgatgggaagcagcggactcacccaagccactaagattgcgatcttaaatgcc
aactacatggctaagcgactggaggcacattttccaatcgtttaccggagcgaaaatggc
ctcgttgcccatgaattcattatagacttcagacagtggaaggggcttgccggaatcgaa
gttgaggatgtcgccaaacgactgatggactacggattccacgcaccgacaatgtcctgg
cccgttccggggaccatgatgattgagccaaccgaaagcgaatgcagagatgagctcgat
cgactttgcgacgcactcatatctatcaagtcagagatggaacgaattgctaacggcgat
tggccacaagacgataaccctctcaaaaacgcgcctcacaccagtagtcgagttgtatcc
gacaactggagttcaccctatggcagagaattggcggctttccctacgacttggactaga
aactgcaaatattggccaacggttgggcgagtcgacaacgtctacggcgatcggaatcta
gtctgctcttgtgtgcccatgtttgaatacgaaagtgattga
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