Candidatus Pelagisphaera phototrophica: GA004_08915
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Entry
GA004_08915 CDS
T09061
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03410
Base excision repair
ppht03430
Mismatch repair
ppht03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GA004_08915 (recJ)
03430 Mismatch repair
GA004_08915 (recJ)
03440 Homologous recombination
GA004_08915 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_08915 (recJ)
DNA repair and recombination proteins [BR:
ppht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GA004_08915 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GA004_08915 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GA004_08915 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
LYTB
Toprim
Motif
Other DBs
NCBI-ProteinID:
QXD30506
LinkDB
All DBs
Position
2051016..2052734
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AA seq
572 aa
AA seq
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MARWEYNPSSASIVGTLRRELNISPSAAELVAKAGFEDSDEARRFLYPRLSEISNPFEIP
NLEKAAHRVCQAIDQVQRIVICGDYDVDGVTSTALLVDILQKFNTYPKFIVPLRSEEGYG
LSRKAAERALDCGDKADLFIALDCGTNSFEEAQYILSCGCDLLIVDHHQTKTPLPEGVLL
VNPHVFGEEECQTLNFCTVGLVFKLAHGILKLKRERQEARAFEITLKDYLDFVSMGTIAD
LVPLTNENRIFTRIGLKALSQTKRKGLSSLMNVSGMTARHGVRPVDISFKLGPRINASGR
LADAALAVELLLSDDASYCMETSLKLDSFNRERQKIEKNIVEEAMRQVESHQSESHGIVV
YGDDWHPGVVGIVASRLSRAYDRPCIVLGKDGELAKGSGRSVEGVNLVEVLEDFSDKLES
WGGHPMAIGVSALIERVEDLRSFFDQSVKKFIETHTYEKTVKLSTYLELEEASAEFMDEI
SLLQPFGQENPEPIFATKRVVFKQKPKVFKEKHFRFYLSDKRGRAIQGVAWKMAHRVPVV
NKPVDIAYRLAWNSFGNQKVLQIELIDWRETH
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
ttggctcgttgggaatacaatccatcttctgcatctatagttgggacgttacgcagagag
ctcaacatcagtccttcagccgcagagcttgtggcgaaggctggatttgaggacagcgac
gaagccaggcgattcctttacccgcgcctgagtgaaatatccaacccgttcgaaataccc
aaccttgaaaaggcggctcatcgcgtttgccaagcgatcgaccaagttcaacgaatcgta
atttgtggagactacgatgtcgacggagtcacaagtaccgcattgcttgtggatatactc
caaaagttcaatacgtacccgaaattcattgtcccacttcgtagtgaagaagggtatggg
ctaagtcgcaaggcagcagaacgggccctggactgcggggacaaggcggatctgtttatt
gctctggactgcggcacaaactcttttgaagaggcccagtacattttgtcttgcggatgc
gatttgcttatcgtggatcaccaccagacaaagacccctttgccggaaggggtgttgctt
gtcaatccgcacgtatttggagaggaggaatgtcaaactttgaacttctgtacggtcggt
ttggtctttaagcttgcccatggaattctgaaattaaagcgggaacgtcaagaggcgcgc
gcgtttgagattacattgaaagactacctcgactttgtatccatggggacgatcgccgat
ctcgtaccgctgactaacgagaaccggatatttacacgcatcggtctgaaagcactttct
cagaccaaacgaaagggtctaagcagtctgatgaatgtatctggaatgacggcccgtcac
ggagtgagaccggttgacatatcgtttaagctcggaccccgcatcaatgctagtgggcga
ctggcggacgcggcgttggcagtggagcttttgttaagcgatgacgcctcctattgcatg
gagacatctttgaagctggactcgttcaaccgtgagcgtcaaaagatagaaaagaatata
gtagaagaggccatgaggcaagttgagtcgcatcagtccgagagtcatggaattgtggtt
tatggggatgactggcatccaggggtagtgggtatcgttgccagccgcctttcacgggcc
tatgaccggccttgtatcgtcctcggaaaggatggggaattagcaaaggggtccggacgt
agtgtggagggagtcaatttggtggaggtgctcgaggacttttccgacaaactggaaagc
tggggagggcaccccatggcaatcggcgtgagcgcgctgattgaacgcgtggaggatttg
cggtcgtttttcgatcagtccgtcaagaagtttatcgaaacccatacgtacgaaaagacg
gttaagctttccacctatcttgaactcgaggaggcatcggcagagtttatggacgagatt
tctcttttgcagccttttggtcaggagaatccggaacccattttcgctacaaagcgggtc
gtttttaaacagaaacccaaagttttcaaagagaagcactttagattttacttatccgat
aaacgaggcagagccatacagggggtcgcttggaagatggcccaccgagttcccgttgtg
aataagccggttgatattgcctatcgcctagcctggaattcctttggcaatcaaaaggtc
ttacagattgaattgatcgactggcgagagactcattag
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