Candidatus Pelagisphaera phototrophica: GA004_09540
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Entry
GA004_09540 CDS
T09061
Symbol
lysS
Name
(GenBank) lysine--tRNA ligase
KO
K04567
lysyl-tRNA synthetase, class II [EC:
6.1.1.6
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
GA004_09540 (lysS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ppht01007
]
GA004_09540 (lysS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppht03016
]
GA004_09540 (lysS)
Enzymes [BR:
ppht01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
GA004_09540 (lysS)
Amino acid related enzymes [BR:
ppht01007
]
Aminoacyl-tRNA synthetase
Class II (A)
GA004_09540 (lysS)
Transfer RNA biogenesis [BR:
ppht03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
GA004_09540 (lysS)
Prokaryotic type
Other AARSs
GA004_09540 (lysS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
tRNA_anti-codon
tRNA-synt_2d
Motif
Other DBs
NCBI-ProteinID:
QXD30618
LinkDB
All DBs
Position
2197901..2199367
Genome browser
AA seq
488 aa
AA seq
DB search
MSSNLSEISHDQLAVRRKKLEDMRSQGADPFRSSFQPTHTAVSAVAAFVGGAEEENQPAV
RVAGRLKFIRKMGKAQFVKIQDQTGIIQSYVRIDALGEEAYANFKKLDTGDIIGVEGTLF
QTKTGEVTVRALQYEMVSKALRPLPEKFHGLTDQEQRIRQRHLDLVMNLESRERFFNRSR
IISGIRRFLEERDYLEVETPVFQNVAGGAAAKPFVTHHNALDRDFVLRISLELYLKRLLV
GGFDRVFEIGRNFRNEGISRRHNPEFTMLELYEAYSDYRGMMELIQSMLRYLVKDVLKKE
EVKMPDGEVIDFMGAWREAKYKDLVCEKVGDLGWFDLSKETKIERAREMKLEVEADWEDY
EVSNEVFGKLIEPTLIQPTFVTHLPKELCPLAKITKDDPSTIDVFELCIGGMEIAPAYSE
QNDPDVQREMFEKQAGEETQSIDDDFLETLEYGMPPAGGLGMGIDRIAILLTEAENIRDV
ILYPQLRS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaaatctttcagaaatctcacacgatcagttggcggtgcgccgcaagaagtta
gaagacatgcgttctcaaggcgcggatccgtttcggtcgtctttccagccgacgcacacc
gccgtctcggcggtcgcagcctttgtcgggggagcggaggaagaaaatcagccggcggtg
cgtgtggcgggccgcttgaagttcattcgcaaaatgggcaaggcccagtttgtcaaaata
caggatcaaacgggtatcatccagtcctatgtacgtatcgacgcactgggagaagaggcg
tacgcgaatttcaaaaagctggataccggcgacatcatcggagtcgagggaacgcttttt
cagacaaaaaccggtgaagtaaccgttcgtgccctgcagtacgaaatggtctccaaggca
ttgaggccgctccctgaaaagtttcatggtctcacggatcaagagcagcggattcgccag
cgccatttggatttggttatgaatttagaatcgcgcgagcgattctttaatagaagccgc
atcataagcggcatccgaagatttttggaggagcgggactacctggaagtagaaactcct
gtttttcagaatgtggccggtggagccgcggcaaagccgtttgtcacgcaccacaacgcg
ctggatcgggactttgtgcttcgaatctcactcgagctttacctcaagcgacttttggtg
ggtgggtttgaccgcgtttttgagattggccgtaatttccgtaatgaaggtatttcgcgt
cgtcacaatccagaatttacgatgctggagctctatgaggcgtactcggattatcgtgga
atgatggagttgattcagagcatgctccggtacctggttaaggacgttctcaaaaaagag
gaagttaaaatgcctgatggcgaagtgattgatttcatgggtgcatggcgtgaggccaag
tacaaggatctcgtttgcgagaaggtaggggatcttggctggtttgacctttccaaggaa
accaaaattgagcgcgcccgcgagatgaagctcgaggtggaagcagactgggaggactat
gaggtgtccaatgaagtgttcgggaagctgattgagcccacgctgatacagccgacattc
gtgacccatttgcccaaagagctatgtccgctggcaaagatcactaaggacgatccttcg
acgatcgacgttttcgagctgtgcataggtggtatggaaatcgctccagcctattccgag
caaaacgatccggatgtgcagcgcgaaatgtttgaaaagcaagcgggagaagagactcag
agtatcgacgacgattttctggagacactcgaatacggtatgccacctgccggaggactc
ggaatgggcattgatcgtattgctattctgctaactgaggcagagaacataagggatgtt
atcctgtatccgcagttgcgctcctaa
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