Candidatus Pelagisphaera phototrophica: GA004_13970
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Entry
GA004_13970 CDS
T09061
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GA004_13970 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_13970 (uvrA)
DNA repair and recombination proteins [BR:
ppht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GA004_13970 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GA004_13970 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
RsgA_GTPase
AAA_16
AAA_29
nSTAND1
UvrA_DNA-bind
DnaJ_CXXCXGXG
AAA_15
AAA_22
AAA_21
AAA_33
AAA_23
DUF4350
AAA_25
MMR_HSR1
nSTAND3
FtsK_SpoIIIE
Dredd_N
Motif
Other DBs
NCBI-ProteinID:
QXD31419
LinkDB
All DBs
Position
3212295..3217937
Genome browser
AA seq
1880 aa
AA seq
DB search
MPKTLSDLKSIRLRGVRQNNLKNIDVDIPLGKYIAVTGLSGAGKSSLVFETLHAEGQRRY
VETFSAYTRQFLDLLEKPDLDEAENVRPSIAIEQKNTIKTSRSTVGTMTELTDFFKVWFS
HVANLFDPVTGEEIQDDNPKTIWEKSLKRWPSQAVVIAFEIQRPEKLDWVEMFLNVKAQG
YSRFITESGIFHRVDDNKAIKALSCKKDTVAYVVQDRMRLETKHLGRFLEAAETALEFGQ
GELVLFNSKPTLLDRFSSGLHSTKSGKRFRPAIPALFSFNSPIGACPECRGFGRVIEIDY
RLALPDKKLSISEGVVRPFEGQVYGESKKDLERACRRLKISTKTPFNQLPKKHQNIVING
EPDFRKKRDSEDWDGNSWYGVKGFFGWLEKKTYKMHVRIFLSRFRAYIKCPHCDGTRLQP
EALCWLWNSYRLPDLYELPINQLYEIVSNYKEPTQATINHRQSDIALEAILSRLRYLNHV
GLGYLTLNRPARTLSGGEVERVTLTSCLGTSLVDTLFVLDEPSVGLHARDIDRLIQIVRT
LTDSGNTVVVVEHDDAMILAADHILEIGPEPGAKGGHVVFEGNSAELLTCSESITGNYFS
GERSIETPHNTRAFKLSGKGNEPPRIRIRGASKNNIQNLDVDIPLNRFVCFSGVSGSGKS
TLMNNVLYQTLLSQRGKLAEDPASLKSLKCGIEPSEIVMVDQAPVSRTPRSNPAVFVNAW
DQIRKIFGDLPEAKAEGYTASSFSFNAGDGRCEHCSGLGYEKVEMQFLSDVFVPCPHCNA
KRFKIGLLEIRFLNHSIADILDLTISQALCLFQEYPKLYDKLEALEQVGLGYLKMGQPLN
TLSGGESQRLKLVKYLSAKNTDKTLQSSESSFILLDEPTTGLHKHDVKRLLAVLQKIVDH
GHSLIVIEHNLDILKSADWIIELGPEAGSDGGKIVFQGTPSDCAIQRKTETGKFLKDEGR
GIKDRSGQELRLAAEDPSPYRNSSSALTITGAREHNLKNLNVSIPHYQLSVVTGVSGSGK
STLAFDIIFGEGQRRFMESMSPYARQFVEQLPRPDLDQLSGIQPTVAIEQRVTRGSRKST
VATITEVAQYLRLLYSRLGIPHNPDTGDALVSQTQTQLLKRVRTMLRASNSSKFKQLLLC
APLVRNRKGHHQPIANWIADHGYDMMRVDGSIIFTKDFKKLDRYKEHNIEVVITDLKSIS
GSPSEISNALKEALKRGHGTALLLDQDENIVSWLSTLRMDPATGVALPELDPKDFSFNSH
KGWCPTCRGHGRIFPWMRERLEDDELLAKSIGADSSEDDDSDGITICPDCDGQRLNRTSR
NVFLPLKGNRKISLPILLEQTPKELLKTLSTLNLDERGRIIARDIVDQIQERLQFMDKVG
LEYLSMDRATQTLSGGEAQRIRLAAQLGSNLAGVLYVLDEPSIGLHARDSDRLIETLKEL
RGKGNTLIVVEHDDTMMEQANCIIDLGPGAGTQGGELIAEGTLSQLKRNKNSLTGKFLKN
GICHPLNGAYRKIQKPILGKANWIELKEANFRNLKNQNLKLPHQRLTMVCGASGAGKSSL
VRDLLGQAAAYSIKSKKKTVTGKMFAKNGKAIEGEEGNVLFRSLSGAHSFRSVIEVDQSP
IGKTPRSTPATYLGVFDTIRLFFSNLPESKMRGYKPGRFSFNTPHGRCDTCSGAGRVKLE
MSFMPDTYVICDDCNGSRYGSELLDLHWKGKNIADVLAMTFEEAADFFSFHSQLGEIMQL
MVETGLGYLTLGQSSPTLSGGEAQRLKLVTELAKGLQNYTERSRGIQRTNLYILEEPTIG
LHLSDCEKLIQLLHKLVNAGHTVVVIEHHLDLLAEADYIVEVGPEGGPKGGKILYQGDLK
GLMTSKRSITAEYMIPKMQD
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaacgctttcagatcttaagtccattcgcctgcgaggggttcgacaaaacaac
ctcaagaatattgatgtcgatattccgctggggaaatacatcgccgtgaccggtctgagc
ggtgcgggcaagtcctcgctcgtttttgaaacactccatgcggagggccaacgtcgctat
gttgaaaccttcagtgcctacacgcgacagtttcttgacctactcgaaaaacccgacctg
gacgaagctgagaacgtccgtccatcgatcgcgatcgagcagaagaacacaatcaaaacc
tctcgttctaccgtgggaacgatgaccgagctgaccgactttttcaaagtctggttcagc
catgtggcgaacctcttcgatcccgtaaccggagaggaaatacaggacgacaatccgaaa
acgatatgggaaaaatctctgaagcgatggccttcgcaagctgtagtcattgctttcgaa
atccagcgacccgaaaagctcgattgggtggaaatgttcctgaatgtcaaagcccaaggg
tattcacgtttcataaccgaatcaggaatctttcaccgagtagatgacaacaaagccata
aaagctctttcctgtaaaaaggacacggttgcctacgttgtccaagaccggatgcgttta
gaaacgaagcacctaggacgttttcttgaggccgccgaaaccgctctcgagttcggtcaa
ggcgaacttgttctcttcaacagtaagccaacgcttctcgatcggttttccagtggcctg
cattccacgaaaagcgggaaacgattccgccccgctattcccgctcttttctctttcaac
tctcccattggagcctgcccagaatgtagaggttttggacgcgtcatagaaatcgattat
cgtctcgccttaccggataaaaagctgagcatctccgagggggttgttcgcccgtttgaa
ggacaagtatacggagaaagcaaaaaggacctcgaacgggcttgtcggcgcctaaaaata
tccaccaagactcccttcaatcaactccctaagaagcatcagaacatagtcatcaacggc
gagcctgacttccggaaaaagcgcgactccgaagattgggacggcaattcttggtacggg
gtcaaaggcttcttcggctggctggaaaagaaaacctacaagatgcatgttcgcatcttc
ctctcgcgtttccgagcctacattaaatgtcctcattgcgacggcactcgcctccaaccc
gaagccctttgctggctttggaacagctaccggcttccggacctctacgagcttcccatc
aatcaactgtacgaaatcgtatccaattacaaagagcccactcaggccaccatcaaccat
cgtcagtcagacatcgctttagaggctattctctcgcgacttcggtacttgaatcacgta
ggactgggatacctcaccctgaaccgccctgcccgaactctaagcggaggcgaggttgaa
agagtgacgctgacttcctgtttgggaacatcactcgtagatacacttttcgttctcgat
gagccttccgtcggcttgcatgcccgcgacatagatcgactcatccagatcgttcgcaca
ctcacggactcgggaaacaccgtggtcgtcgttgagcatgacgacgccatgattctcgct
gctgaccacattctggagatcggtcccgaacccggagcaaaggggggtcacgtcgtattc
gaaggtaactcggcagagctgctcacctgttcagagagcatcacaggcaactatttttca
ggggagcgatccatcgaaacaccgcacaatactcgtgcctttaaattatctggaaaaggg
aacgagcctccgagaattcggatccgtggcgcgagtaaaaacaatatccaaaatctggat
gtggatattcctctaaaccggtttgtctgtttcagtggtgtatccggatcgggaaagagc
acactcatgaacaatgtgctctatcaaacactgctatcccaaagagggaagctggctgaa
gaccccgcttctttaaagagcctcaagtgcggcatcgagcccagtgaaatagtcatggtg
gatcaagcgccggtcagtcgtactcctcgatccaatcccgcagtcttcgtaaacgcctgg
gaccaaattcgcaaaatattcggagacctgcctgaggcgaaggctgaaggctacacggcc
tcaagcttttctttcaatgcaggagacggtcggtgtgaacattgcagtgggcttggatac
gagaaggttgagatgcagtttctcagcgacgtattcgtgccctgccctcattgcaatgcc
aagcgcttcaagattggactactcgaaattcgattcctgaaccactccatcgccgacata
ctggatcttaccatttcccaagcgctgtgcctctttcaagagtacccaaaattatacgac
aagctagaagccctagagcaagtgggattgggatacctaaaaatgggccagcctctaaac
accttatcgggtggagagtcccagcgtcttaaactcgttaaatacctatcggctaagaat
acggataaaacgctacaatcttcagaaagtagcttcatattgctggatgagcccactacg
ggacttcacaaacacgatgtaaagcgtctcctcgcagtccttcaaaaaatcgtcgaccac
ggtcacagcctgatcgtcattgaacacaatttggatatattaaagtccgctgactggatc
atcgagctcggcccagaagcaggctccgatggcggcaaaattgtgttccaggggacacct
tccgattgcgcaattcaacgtaaaacggaaaccggaaagtttcttaaggatgaaggtaga
gggattaaagatagatctggtcaagaacttcgtttggccgcggaagaccccagcccttat
agaaattccagttccgccttaaccatcactggagcgcgggagcacaatctcaagaacctc
aatgtttcgattccccactatcagctctctgtcgttactggcgtttcgggctcaggcaag
tccacgttggcattcgatattatctttggtgaaggacagcggcgatttatggaatccatg
tcaccctacgcccgccagtttgtcgaacaactgcctcggcctgacttggatcagctttcg
ggaatccagccaactgtcgcgatcgagcaaagagtcacccgcgggagccgtaaatcgacc
gtcgccacgattaccgaagtcgcccagtacctccgacttctctactctcgattgggtata
ccccataatccggatacgggtgacgcgcttgtctcacaaacccagacacagctcttgaag
cgcgttcgcacgatgctccgtgcttcgaattccagcaaattcaaacaattgctactttgc
gctccgctcgtacgaaatcgaaagggccatcatcaacccatagccaactggattgcagac
catggctacgatatgatgcgggtcgatgggtcgattatctttaccaaggatttcaaaaaa
ctggaccgttataaggagcacaacatcgaagtggtcattactgatctcaaatcgatttca
gggtctccctctgaaatctcaaatgcactcaaggaagcgctaaaacggggtcatggcact
gcgttgctcttggatcaggatgagaatatcgtctcctggctttccacgcttcgtatggat
ccggcaactggcgtggccttgccagaactcgacccgaaggatttttccttcaactcacac
aaaggctggtgccccacctgtcgcggacatggtcggatttttccttggatgcgtgagcgt
ctcgaagatgatgaacttctcgcaaagtctatcggagctgattccagcgaagatgacgac
agcgacggaatcacgatttgccccgattgcgacggtcagcgcttaaaccgcacgagtcgt
aacgtcttcctcccgctgaaaggtaataggaaaatatcacttcccattcttctcgaacaa
acaccgaaagaactcctcaaaactcttagcacgctaaatctcgacgagcgggggcgtatt
attgctcgcgacattgttgatcagatccaagagcgtctccaattcatggataaagtgggt
cttgagtacctttccatggatcgagcgacccaaaccctttccggaggtgaggcccaacgt
atccgtctagctgcgcagctaggatccaatctggccggggttctttacgttcttgatgaa
cccagcattggccttcacgcccgtgacagcgatcgactgattgaaaccctcaaagaactt
cggggaaaagggaacaccctcatcgttgtggagcacgatgacaccatgatggagcaagcc
aattgcataatcgatttaggccccggagcgggaacccaagggggggaactcatcgctgaa
ggcaccctatcacaactaaaacgaaacaagaactctctcaccggtaaattcctgaaaaac
ggtatctgtcatccactgaatggcgcgtaccgcaagattcaaaaaccaattttggggaaa
gctaattggattgagctaaaagaggcaaatttccgcaaccttaagaaccagaaccttaaa
cttccccatcaacgactcacaatggtttgcggcgcatcgggtgcgggaaagtcttcgctc
gtaagagacctgctcggtcaggccgcagcctactccattaaatcgaagaaaaagactgtc
acgggaaagatgtttgccaagaatgggaaggcgattgaaggcgaagaaggaaacgttttg
tttagatccctatccggagcccactcctttcgatcggtcatcgaagttgaccaatctccg
atcggcaaaacccctcgatctactcccgctacctatctcggtgtattcgatacgatacgt
ctctttttctcaaatttgcccgagtcgaaaatgcggggatacaaacccggccgtttttct
ttcaacaccccccacggaagatgcgacacttgctcgggagctgggcgtgtaaaactcgag
atgagctttatgcctgacacttatgtgatttgcgatgattgcaatggttctcgctatgga
tccgaacttctcgatctccattggaaaggaaaaaacatcgccgacgtattggccatgacc
tttgaagaagccgccgacttcttcagcttccactctcaactgggagagattatgcagctc
atggtcgaaaccggtctcgggtacctaactcttgggcaaagcagtcctacactatccggc
ggggaagcccaacgtttgaaactggttaccgagctagcaaaaggattgcaaaactacact
gagagaagccgtggaattcaaaggaccaatttgtacatactggaagaacccaccattggg
ctccatctcagtgactgtgaaaagctgatacaacttctccacaaactcgttaatgcgggc
cataccgttgtcgttatcgaacatcacctcgacctgctggcagaggctgactacatcgtc
gaagtcggtcccgagggtgggccgaagggcgggaagattctataccaaggcgatctgaaa
gggctcatgacctccaaacgcagcataacagctgagtacatgatacctaaaatgcaggac
tga
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