Candidatus Pelagisphaera phototrophica: GA004_14375
Help
Entry
GA004_14375 CDS
T09061
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GA004_14375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_14375
Enzymes [BR:
ppht01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GA004_14375
DNA repair and recombination proteins [BR:
ppht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GA004_14375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
AAA_11
Viral_helicase1
HHH_5
PhoH
SLFN-g3_helicase
PIF1
AAA_22
Helicase_RecD
T2SSE
DEAD
nSTAND3
AAA_16
AAA
UvrD-helicase
NPHP3_N
NTPase_1
AAA_29
bpMoxR
AAA_5
AAA_28
TrwB_AAD_bind
SRP54
ABC_tran
AAA_23
HHH_2
AAA_3
NACHT
Mg_chelatase
UvrD_C
ORC-CDC6-like
TsaE
AAA_25
AAA_12
RsgA_GTPase
cobW
Motif
Other DBs
NCBI-ProteinID:
QXD31498
LinkDB
All DBs
Position
3317603..3319789
Genome browser
AA seq
728 aa
AA seq
DB search
MSQSTSSETLKGVLERIKYSNDEDGYLIANLRPENAKNAVTIVGKFPGVQCGETLKVTGD
WSRHPAHGPQFKATQFESELPASVFGIRKYLGSGLVKGISKGLAERIVDRFGESTLKVIS
EESARLQEVDGIGKQRASSIKEAWDEQSHIRDLSLFLTPYGVSPSQILKIYNEFGFVAAD
QIKENPYKLAREIRGIGFKTCDRIAINMGIGNDSPQRVDAGLEFVMQELQDEGNTAFPEN
ELIETAVEKLEIDKAVAKAGLERVFTNRILSKFEPEGLTTYWQLPFNHRAEEQIAQSVIR
IQSQPSCLPPIKRQKAVEWVQDKAGFEFGERQGEAISMVLSHKLSILTGGPGTGKTTILR
AVVSILKAKKVRVLLAAPTGRAAQRLSETTGAFGQTIHRLLKFDPAEGSFTVNESKPLSA
DFVIVDEASMLDTRLAASLFQAIQTDSHLVLVGDIDQLPSVGAGNVLKDLIGSNRIPVTR
LDQVFRQAERSSIVHYAHAINQGQVSIPATVESARDLVENKDFQFLAASNQSECSEKILK
VFTHFVRGTLGLDPINDAQTLAPMHKGEAGVGNLNTLLQASLNSETESMPFGFLTYKRGD
KVIQTRNNYDKSIFNGDIGIIRSIDGINGIVKVDFDGNVVDYEKPDLIDLSLAYAVSIHK
SQGSEYPVVIIPLLKAHFMMLQRNLIYTAITRGKKKVIIVGDPAAYAMATNNADSKSRST
RLKERLTL
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtgtctcaatcaacatccagtgaaaccctcaagggtgtactcgagcgcatcaagtattcg
aatgatgaagacggctacttgattgctaatcttagacctgaaaacgcaaagaacgcggtc
acgatcgtcggcaaatttccaggcgtgcaatgtggcgaaaccttaaaggttacaggagat
tggtcccggcaccctgcccatggtcctcaattcaaagcaactcagtttgaatccgaactc
ccggccagcgtttttggaattcgcaagtaccttggaagcggcctagtaaagggaatatcc
aaaggcctagcagagagaatcgtagaccgattcggtgaatctacgctcaaggttatttcc
gaagaatccgcccgactacaagaggtggatgggattggaaaacaaagagctagttcaatt
aaagaagcttgggacgagcagagccatatcagggacctttcccttttcctcactccttat
ggggtatcgccgtctcaaatacttaagatctataacgaatttggttttgttgcagccgat
caaataaaggaaaacccatataagcttgctcgagaaattcgaggtattggcttcaaaacc
tgcgatcgcatcgctatcaatatggggattggcaacgacagtccgcagcgcgtagacgcg
ggcttagaatttgtcatgcaagagctgcaagacgaaggcaacactgcatttccagagaac
gaactcatcgagaccgcagtcgagaaattggaaattgacaaagcggtagccaaagcagga
ctggaacgtgtatttaccaatcgtatactttctaaatttgagcccgagggcttaaccacc
tactggcagcttccgttcaatcatcgagctgaggaacaaattgcccaatccgttatccgt
attcagagccaacccagctgccttcctcctatcaaacgccagaaagcagttgagtgggtg
caggataaagccggttttgaatttggagaacgccaaggggaagccatatccatggtattg
tctcacaaactctcaatattaaccggtggacctggaaccggaaaaacaacgattcttcgc
gctgttgtaagtattctcaaagcaaagaaggttcgggtgcttctggctgcccctaccggg
cgagcggcccaacgcttgtcggaaacgacgggagctttcggacaaaccatccatcgttta
ttaaagttcgaccccgcggaaggttcttttacggtcaacgagtcgaaaccactcagtgcc
gacttcgtaatcgtcgacgaggcgtccatgttggatacacgacttgccgctagccttttc
caagccattcaaacggatagccatctggttcttgtcggagacatagaccagcttccctct
gtcggagcgggaaacgtgctcaaagacctgatcggttcaaatcgaattcctgtgactcgc
ctagatcaagtttttcggcaagctgagcggagcagtatcgtacattacgcccacgctatc
aaccaggggcaggtttcaatacctgcaactgtagaatccgctcgcgatctcgtggaaaat
aaagacttccagttcttagccgcttcaaaccaatcagagtgctccgagaagatcctcaag
gtattcacccacttcgtcagaggtacgctaggcttagatcccataaacgacgcccagact
ctggcccccatgcataaaggagaagcgggagttgggaatttgaataccctcttgcaagcg
tccctgaattccgaaaccgagtctatgccttttggttttttaacgtacaaacggggtgac
aaggtcattcaaactcgaaacaactacgacaagagcatattcaacggtgatatcggaatc
atcagatccatcgatggaattaatggaattgtaaaggtagactttgacggcaatgtagtg
gactacgaaaagccggacctcatcgatctatcgctcgcctatgcagtgagtatccataag
tctcaaggcagtgaatatcctgtagttattattcctttactaaaggctcacttcatgatg
cttcaacgaaatctaatctatacagctataacacgcggaaagaaaaaagtcataatcgtg
ggggacccggcagcttatgccatggcgacaaacaatgcggattcaaagtctcgaagcact
agactaaaggagaggctcaccctctag
DBGET
integrated database retrieval system
