Candidatus Pelagisphaera phototrophica: GA004_14835
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Entry
GA004_14835 CDS
T09061
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03030
DNA replication
ppht03430
Mismatch repair
ppht03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GA004_14835 (dnaE)
03430 Mismatch repair
GA004_14835 (dnaE)
03440 Homologous recombination
GA004_14835 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppht03032
]
GA004_14835 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_14835 (dnaE)
Enzymes [BR:
ppht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GA004_14835 (dnaE)
DNA replication proteins [BR:
ppht03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GA004_14835 (dnaE)
DNA repair and recombination proteins [BR:
ppht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GA004_14835 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF655
T2SSK
Motif
Other DBs
NCBI-ProteinID:
QXD31584
LinkDB
All DBs
Position
3416106..3419891
Genome browser
AA seq
1261 aa
AA seq
DB search
MSASGPFVHLHNHTHYSLLDGCAKPARAAARAKELGMPALAMTDHGNLFGAIDFYRSCKK
GDIKPLIGCELYYVNDHKQNERPRRERKRTDDIGDIPEDYVPSPEDFPKFQIHHKGVIAK
DFEGYQNLCNLVSDAHLNGVYYKPRTDIEKLAQYSKGLIGFSGCINGVAAQYLIYGDEAN
ARRVTADFVDIFGKENYFIELQDHGMPVQRRIIPGLLKLAKEFDLKAICANDSHYVYKED
SDPHDALLCIQTGKMISDPNRMKYPSQEFYMKSREEMYEIFKEVPETLDNTVYVAEMCDL
KIPFDENHYPVFEAPVELRSFKQDPDTFDRILDIYEVEKTKVNQQDGKDEVCKLDKEQRK
ELKANGTLLLELCKRGLLERYGVDYDNRTAYTPKEGLREDFADFLCNQLEYQIAIIAGTG
FIDYFLIVWDFINFARNEGIPVGPGRGSGAGCIVAYVLKITDIDPLRFGLLFERMLNLER
VSPPDFDIDFCMRRREDVVNFVREKYGAESVANIITYGTFGAKMVIRDMARVNDVPFAEA
DKLAKMIPDELNISLEDSVKKSKELRDEIGRNPVAKKIVEQGYVIEGMVRNTGKHACGII
IGDQPIHNLVPVTLQEGDLTTQYAKGPAEDLGLLKMDFLGLKTLTVISDAETSVRRLDEM
ADFDIEKITLEDEKTFEILNQGKTVGVFQLESTGMQSLCKQIGLSSFEEIIALVALYRPG
PMQFIPQFIRGKKDASTIEIPHPLLKELVGETYGVMVYQEQVMEAARIIAGYTLGGADIL
RRAMGKKIASVMEAQKEVFVEGAEKTHGMSRKMALGIFTILEKFAAYGFNKSHSAAYAML
SYRTAYLKANYPVEFMAAVLSSEQGNADKVAHFIDESEAMDIRVLSPDINTSLRSFTPVV
NDPVDAAEGRPGSIRFGLGAIKGVGDAAAIKIIEEREANGSFQDFDEFLERMDSKAVNRR
VLECLVKTGAFDFSLEPRGAIFHRLEEAINYAAARQRDKEAGQNSFFDILQEDTTQNGNR
DADGPREIDISKQFPQHEMLTYEKELLGFYVSGHPLDDYKGIAEALTNFEIDKMDQLGDR
VEFQICGVASGVTKKLARKDNRPWAFFNVGTLKGTVLMNCYADAFGEYGHNLENEKLVLV
KGSVFHNEEGVRLSVSEIYPLETSLADQVKHITWILDPKGDTERFFYDYREALDATRGST
TSDIAFRMDSESIVTAPTASSLRWKVNPEGWSKLRSSTAVVGCVIQTGPVELKKKERRWK
R
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgtccggtccgtttgttcatcttcacaatcacacgcactactctctccttgac
gggtgcgcgaagcccgctcgggcggcggctcgagcgaaggagctgggcatgccggccttg
gccatgaccgaccacggcaaccttttcggggctatcgacttctaccgctcctgcaagaag
ggggatatcaagccgctcatcggatgcgaactctactacgtcaacgaccacaagcaaaac
gagcggccgcgtcgagaacgtaaacggaccgacgacattggcgacatccccgaggactac
gtcccctcccctgaggattttcccaaattccagatccaccacaaaggggtcatcgccaag
gatttcgaaggttatcaaaacctctgcaacctcgtctcggatgcccacctcaatggcgtg
tactacaagccgcgtactgatattgaaaagcttgctcaatactcgaaaggtctgatcggc
ttcagcggctgcatcaatggagtcgcggcccagtatctgatttatggcgacgaagcgaat
gcgcgccgcgttacggctgacttcgtcgatattttcgggaaggagaactatttcatcgag
ctgcaggaccacggcatgccggtccagcggcgtattattccaggacttctgaaactcgcc
aaagagttcgacttgaaagccatctgcgccaacgactctcactacgtttacaaggaagac
tcggacccgcacgacgccttgctctgtatccagactggaaagatgatttccgatcccaac
cggatgaagtatccctctcaggaattctacatgaagagccgggaggagatgtacgaaatt
ttcaaggaagtgcctgagacgctcgacaatacggtctacgtggccgagatgtgcgatctc
aagatacccttcgacgagaaccactatccggtcttcgaagcaccagtcgaactgaggtca
ttcaagcaagaccccgacacgtttgaccgcatactcgacatttacgaagtcgaaaagacg
aaggtcaatcagcaggacggaaaagacgaagtctgcaagctcgacaaggagcagcggaag
gagctcaaagcaaacggcaccctcctgttggaactctgcaagcgtggcctcctcgaacgc
tacggcgtcgactacgacaatcgcactgcctacacgcccaaggagggtctaagggaagat
ttcgccgacttcctttgtaatcagctcgaataccagatcgcaatcatcgccggtaccggc
ttcatcgactactttttgattgtctgggacttcatcaacttcgcccgtaacgagggcatt
cccgtaggaccgggccgcggatcgggcgcaggttgcatcgttgcctacgtattgaaaatt
actgacatcgatccgttgaggttcgggcttctcttcgagcgcatgctcaatctggaacgg
gtatcccctcccgacttcgacatcgacttctgcatgcgtcgccgcgaagacgtggttaat
ttcgtgcgagaaaagtacggggccgaaagcgttgcgaatatcattacctacggaacgttc
ggggccaaaatggtcattcgcgacatggcccgggtgaacgacgttcctttcgccgaagcc
gacaagctcgccaagatgatccccgacgagctcaacatttctctcgaagattccgtcaag
aaatcgaaggagcttcgcgacgagatcggccgaaacccagtcgccaagaagatcgtcgaa
caaggctacgttatcgagggaatggtccgcaacacgggcaaacacgcttgcggtatcatc
atcggcgaccagcccatccacaacctcgtccccgtcaccctgcaagaaggcgacctcacc
acgcaatacgctaagggaccggcggaagatctcggtctgctcaagatggacttcctcggt
ctcaaaacgcttaccgttatttcagatgccgagaccagtgtccggcgactggacgagatg
gccgatttcgacatcgagaagatcactctcgaagacgaaaagaccttcgagattttgaat
cagggtaaaacggtcggagtcttccagttggagtccactggcatgcaatctttgtgcaaa
cagattggattgtcgtccttcgaagagattatcgctctcgtggccctctatcgtcccggt
cccatgcaattcatccctcagttcattcgcggcaagaaagacgcgagcacgatcgagatt
ccacacccgctactcaaagaactggtcggcgaaacgtacggcgtgatggtctaccaggaa
caggttatggaagccgcccgtatcatcgcaggctatacactggggggcgcagatattttg
cgacgagcgatgggtaaaaagatcgcttcggtcatggaagcccaaaaagaagtcttcgtg
gagggtgctgaaaaaacgcacggaatgagccgcaagatggcactcggcattttcactatc
cttgagaaattcgcggcctacggattcaacaaatcccactccgcggcctacgccatgttg
tcttatcggacggcgtatctaaaggcgaattacccagtagagttcatggcggcggtcctt
tccagcgagcaaggaaatgctgacaaagtcgcccacttcatcgacgaatccgaggcgatg
gacattcgcgtgctttcgcccgacatcaacacctcactccgatcgttcacccccgtggtg
aacgatcccgtagatgcagcggagggacggcccggttcgatccgcttcggactgggggcc
atcaaaggagtgggcgatgccgccgcgatcaaaatcattgaagagcgggaagccaacggc
agcttccaggacttcgatgaattccttgaacgcatggattcgaaagcagtcaatcgccgc
gtactggaatgcctcgtaaaaaccggagcctttgacttttcgctcgagcctcgcggagcc
atcttccatcggctggaagaggcgatcaactacgccgccgcccgccaacgggacaaagag
gccggacaaaactcgtttttcgatatcttgcaggaagacaccacgcaaaacggaaatagg
gatgccgatggaccacgcgaaatcgacataagcaaacagtttccgcagcacgagatgctc
acatacgaaaaggaactgctcgggttctacgtttccgggcatccactcgacgactacaaa
ggaatcgcggaagcgcttaccaatttcgagatcgacaagatggaccaactcggcgaccgg
gttgagtttcaaatctgcggggtggcatcgggcgtaaccaaaaaactggcccgaaaggac
aatcggccttgggcctttttcaatgtgggaaccctcaaaggcaccgtcctgatgaattgc
tacgcggacgcattcggcgagtacgggcacaacctcgagaatgaaaaactcgtgctcgtt
aaggggagcgtgtttcacaacgaagaaggcgttcgcttaagcgtgtcggaaatctacccg
ctggaaaccagcctagctgaccaggtaaagcatatcacttggattctcgacccaaagggt
gacaccgaacgatttttctacgactatcgggaggctctagacgcaactcgaggcagcaca
acgagtgatatcgctttccgaatggattcggagtcgatcgtcactgcgcccaccgcttcc
tctcttcgctggaaggttaatccggaagggtggagtaaacttcgcagttcaactgctgtc
gttggctgcgtaatacaaaccgggcctgtcgagctaaagaaaaaggaaagacgctggaag
cggtga
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integrated database retrieval system
