Candidatus Pelagisphaera phototrophica: GA004_16090
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Entry
GA004_16090 CDS
T09061
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppht03016
]
GA004_16090 (truB)
Enzymes [BR:
ppht01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
GA004_16090 (truB)
Transfer RNA biogenesis [BR:
ppht03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
GA004_16090 (truB)
Prokaryotic type
GA004_16090 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DKCLD
PseudoU_synth_2
MciZ
Motif
Other DBs
NCBI-ProteinID:
QXD31811
LinkDB
All DBs
Position
complement(3682182..3682904)
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AA seq
240 aa
AA seq
DB search
MKENRELEGVLLIDKPSGLTSHDVVDKVRRKLKMKRIGHAGTLDPMATGLLIILVGKATK
LSQYLMSLDKTYEGSITLGESTNTYDGEGEVMTKRPVPSLTLEEVATVVSSYLGDQYQKP
PMFSAVKINGQPLYKMARQGKEVEREPRFIRISRFDVTRFDSPEVDFSLDCTKGTYVRSL
ANDIGEKIGCGGYLSELRRIASDKFNLNDAITLERFLEANPEEISKALIGKTEALPNSVL
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagaatagagagctagagggcgtattgttgatcgacaagccgagcggactaact
tcccacgatgtggtggataaggttcgcaggaaactgaaaatgaagcgtatcgggcatgct
ggtacactcgatccgatggcgacaggacttctcattatactagtgggcaaagcgaccaag
ctttcgcagtatctgatgagcttggataagacttatgagggaagcattacgctgggagag
tcgacgaatacgtacgatggtgaaggtgaagtgatgactaagcgccccgtccccagttta
acgctggaagaggttgctacggttgtgtcctcctacctgggggatcagtaccagaagcct
ccaatgttttcggcagtgaaaatcaatggccagcccttgtacaagatggcccgccagggc
aaagaggtggagcgagagccaagatttatcagaatctcccgcttcgacgtaacacgcttt
gattcaccggaggtggacttcagcctagattgcacaaaagggacctatgttcgttccctc
gcgaatgacattggggaaaaaattggctgtgggggctatctttcggaactgcgccgaatc
gcttccgacaagtttaatttaaatgatgccatcacattggagcgatttctcgaagccaat
ccagaggaaatttccaaggccctaatcggaaaaaccgaagcgttgcccaattctgtgttg
taa
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