Candidatus Pelagisphaera phototrophica: GA004_16285
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Entry
GA004_16285 CDS
T09061
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht02020
Two-component system
ppht02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GA004_16285
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GA004_16285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppht03021
]
GA004_16285
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ppht02035
]
GA004_16285
Transcription machinery [BR:
ppht03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GA004_16285
Bacterial motility proteins [BR:
ppht02035
]
Flagellar system
Flagellar assembly proteins
Stator
GA004_16285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
UPF0122
PABC_AtC3H46
Motif
Other DBs
NCBI-ProteinID:
QXD31848
LinkDB
All DBs
Position
complement(3713449..3714264)
Genome browser
AA seq
271 aa
AA seq
DB search
MNQTIVKSPKTEVKMDKAKVAKVYAKNDESSKPPVQQEALFETYLPLVKSIVTRIKINLP
PHIDEQDLHSVGITGLISALKKYDPEQKKSFGSYAAMRIRGAILDELRRMDWMPRNARTN
FKKLRKTVEELEQKLGRPAEEEEIRLELGLTHKEYNSLMAEVRPISFLPLDNTSNSGGDD
SDSADLSEIIPDEGVVPVTSKMEKDEVTQLVAERINQLPEVPRKVLAMYYFQDMRLAEIA
EVFSLTESRICQIHSQAIISLRSYITSVMHK
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaaacgatagttaagagccccaaaacagaagttaaaatggacaaggcgaaagta
gccaaggtatacgcgaaaaacgatgaatcgtcgaaaccgccggttcagcaggaagccctc
ttcgagacctaccttcccttggttaagtcgattgtcactcgtataaaaatcaatttgcct
cctcacattgatgagcaggacctacacagcgttgggatcacaggattgatcagtgcgctg
aagaaatacgacccagagcagaaaaagtcgtttggatcttatgccgccatgcgcatacga
ggagcgatcctggacgaattgcgccggatggactggatgccccggaatgctcgtacaaat
ttcaaaaaacttcgaaaaacggttgaagagcttgagcaaaaactagggcgtcctgcagag
gaggaagagattcggttggagttaggcttaactcataaggagtacaattctttaatggcg
gaagtccgccctatcagcttcttgccactggacaacacgtccaattcaggcggtgacgat
tcagactcggccgaccttagcgagatcattcctgacgaaggagttgtcccggtgacatcg
aagatggagaaggacgaagttactcagctggtagccgaaagaatcaaccaattgcctgag
gttcctcgtaaggttctcgccatgtactatttccaagacatgcgactagcggaaatcgcg
gaggtatttagccttacggaatctcggatttgtcagattcactctcaggccatcataagc
ttacgaagctatattacgagtgtgatgcataagtaa
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