Candidatus Pelagisphaera phototrophica: GA004_16610
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Entry
GA004_16610 CDS
T09061
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GA004_16610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppht03021
]
GA004_16610
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_16610
Enzymes [BR:
ppht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GA004_16610
Transcription machinery [BR:
ppht03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GA004_16610
DNA repair and recombination proteins [BR:
ppht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GA004_16610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF7204
Motif
Other DBs
NCBI-ProteinID:
QXD31908
LinkDB
All DBs
Position
complement(3781329..3782330)
Genome browser
AA seq
333 aa
AA seq
DB search
MPKRIGKFELPNRLVKVEEGSSTTYAKFIAEPFEAGYGHTIGNSLRRVLLSSIEGAGITS
IKIDGVSHEFQSVDGIVEDVTDIVLNLKRILLICHNREGAKLIINVNRSGQITAADIQAD
HNVEVVNPDQAICTLDREMQFTAELEIGVGRGYCPGEDNKNEEQPIGVIPIDTLYSPVSL
VKYSVEATRVGQITDYDKLILEIWTDGRMTPDDALKQSGAILKHHLDVFDNVSDENYEFE
DEGAEVSEEQNKLRKLLNMSVNEIELSVRAANCLNNANITTVGELAMKSEQEMLKYRNFG
KKSLNEIKDKLESLGLSLGMKFDERLLDMKKEL
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacgtatcggaaagttcgaactccctaatcgtctcgtaaaagtggaggaaggt
tcctcgactacatatgccaagtttattgccgagcctttcgaggctggatatgggcatacc
attggtaattccttgaggcgtgtattgctaagctctatagaaggagcgggcataacatct
attaagatcgatggcgttagccacgaatttcagagcgttgatggaatcgtcgaagacgta
accgacatcgttttgaatcttaagcggatcttgcttatctgccataatcgggaaggagcg
aagttgataatcaacgtcaaccgctcaggccaaattaccgctgctgatattcaagctgac
cataatgtagaggtagtaaatcccgaccaagccatttgcaccttggatcgcgaaatgcaa
ttcactgctgagcttgaaatcggagtaggacgtggttattgcccaggggaagacaacaag
aacgaggaacagccaattggcgtaattccaattgatacgttgtacagccccgttagtctc
gtgaagtactcggttgaagcgactcgtgtgggacagatcacggactacgacaagttgatc
ttagaaatttggacagatggacgaatgactccagatgacgcgctcaagcagtcaggagcc
atcctcaaacatcacctcgatgtattcgacaatgtgtccgacgagaattacgaattcgaa
gacgagggagcagaagtaagcgaagagcagaacaagctccgtaagctcctcaacatgagc
gtcaatgagatcgagctttcggttcgtgccgcgaattgcttgaacaacgcgaacattaca
acggtaggcgagcttgccatgaagagtgagcaggaaatgctcaagtaccgtaacttcgga
aagaaatctctaaacgaaattaaagataaactagaatctctcggcctttctctaggcatg
aaattcgacgagcgccttcttgatatgaagaaggaactatag
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