Candidatus Pelagisphaera phototrophica: GA004_16760
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Entry
GA004_16760 CDS
T09061
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GA004_16760 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppht03021
]
GA004_16760 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_16760 (rpoC)
Enzymes [BR:
ppht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GA004_16760 (rpoC)
Transcription machinery [BR:
ppht03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GA004_16760 (rpoC)
DNA repair and recombination proteins [BR:
ppht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GA004_16760 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
DUF4926
Motif
Other DBs
NCBI-ProteinID:
QXD31935
LinkDB
All DBs
Position
complement(3800322..3804470)
Genome browser
AA seq
1382 aa
AA seq
DB search
MSSQEAQETLGIERESNFDCVTINVASTETIRSWSRGEVKNPETINYRTFKPEPGGLFCQ
RIFGPVRDYECACGKYKRIKYKGVICDRCGVEVTVSRVRRSRMGHIELAVPVTHIWFLKS
MPSRLGLLLDMTARSLERVIYYEAFMVTDPGRTPLEEKQLLTDQEYLQAVEEYGDDSFVA
KMGAEALREVLSVMDMPGTVLELQESMRSTKSKQIKKKLAKRLKVIQGFIKSSSRPEWMI
QEVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKNLMQLKTPDVIIHNEKRM
LQEAVDALFDNGRHGRPVTGAGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVIG
PELRLHQCGLPKKMALVLFEPFIIRRLKELGFVHTVRGARRMIEKKSPEVWDILEEVTKG
HPVLLNRAPTLHRLSIQAFEPVLIEGEAIRVHPLVCTAYNADFDGDQMAVHVPLSLEATL
ECKTLMMASGNIFSPSSGKPILTPSQDVILGSYYLTMEPGTVEEDAGRIPLAATENEALF
AQMDGVRETHDWIRIPNPDYGRETVFGNGEHKTITTTIGRIRFSQIWPKELGFLNFQVDK
SELGNIINNTYKVSGPEQTVLSLDRLKKLGFDVATMAGISIGIDDMIIPESKTDIVANAF
GKIDEVEGQYRKGIITTGERYNKIIDIWTVATDEIKKAVFEKLQTNGGKGGVNPVYVMMD
SGARGNPNQVRQLCGTRGLMAKPSGEIIERPILSSFREGLTVLEYFISTHGARKGLADTA
LKTADAGYLTRKLCDVAMDVIITEDDCGTRDGIWKRAIFEGDDEIVSLRERIEGRCACDD
VFNPSNLDEIIITSGELVSEEAAQRVEDCGIERIKVMSPLTSSASYGIDSKSYGINPASN
DLAKLGDSVGIVAAQSIGEPGTQLTMRTFHIGGIASSVVTDPRIIARNTGRVKYRGLRLV
HIETPEGPVFIALNKTGAIQILDKNDRELEAYDIVVGSAIRIPDGEEIKAGGVLASWDPY
NIPNLSEKAGTVRFRDMIRGVTIKKELDESSGRIATVIIEHKEDLNPSVEICDDSGKVQA
VYSIPTGAQVSVAEGDIIAQGALLAKTPRQASKTKDITGGLPRVAELFEARRPKEAAEMA
RLDGVVSFGGTVRAKRKLIVSNEETGTDEEHLIPHAKQIIVQEGDVVHKGQHLTEGSADP
HEILDILGPNRLYEFLINEVQEVYRLQGVTINDKHIELIIRQMLRKVRISDPGDTEFFWG
EQVERTTFMRENNRIIEAGGKPAEAEPVLLGITKASIETESFISAASFQETTRVLTDAST
LSKIDTLLGFKENVIMGHLIPAGTGLPQYRDLRITLPFGSEIDEEVPTEEAAESMVQNSE
VI
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgtctagccaagaagcccaagaaaccctcggtatcgaacgtgaatcgaacttcgattgc
gtaacgattaacgtcgcatctacggaaacgatccgttcctggtctcgtggagaggtcaag
aacccagaaacgattaactatcgtacctttaagccagagccaggtggcctgttttgccaa
cgaattttcggccccgtccgcgactacgagtgtgcgtgtggcaagtataagcgaattaag
tacaaaggagtcatttgtgatcgttgcggagtagaagttacggtatctcgtgttcgtcgt
tcccgtatgggtcatatcgaactcgcggtccctgttactcacatctggtttttgaaaagc
atgccatctcgtcttggcttgttgcttgatatgactgcccgcagcctagaacgcgtcatt
tactatgaagctttcatggtcactgatccaggacgtactcctcttgaggaaaagcagctt
ttgacggatcaagagtacctgcaagcggtggaggaatacggcgacgattccttcgttgct
aagatgggtgcggaagccttacgcgaagtgctgtctgtaatggatatgccgggtactgtt
ctggagcttcaggagtcgatgcggagcaccaaatcgaagcagattaaaaagaagttagcg
aaacgacttaaggttattcagggattcataaaatcatcgtctcgtcccgagtggatgatt
caggaggttctcccagtgattccaccagatctgcgtcctttggtcccattggaaggtggg
cgcttcgctacatcggacctgaacgatctgtaccgtcgtgtaataaatcgtaacaaccgc
cttaagaacttgatgcagttgaaaacgccggatgtgattatccacaatgagaagcgtatg
cttcaggaggcggtcgatgcgctattcgataatggtcgccatggtcgtcccgttaccggt
gctggaaaccgtccgctaaaatctttgagtgatatgctcaaaggtaagcaaggtcgtttt
cgccagaaccttctcggcaagcgtgtcgactactcgggacgttcggtaatcgttattggc
ccagagcttcgcctgcaccagtgtggtttgccaaagaaaatggctttggtgcttttcgaa
cctttcattatccggcgtttgaaggaacttggttttgttcataccgttcgtggagctcgt
cgcatgattgagaagaagtctccagaagtttgggacatacttgaagaagtgaccaagggg
cacccggttttattgaaccgtgcacctacactgcacagactttccatccaggcttttgaa
cctgtattgattgaaggagaagcgattcgtgttcatccattggtttgtactgcgtacaat
gcggacttcgacggagaccagatggcggtacacgttccgttgtcactggaggcgactctt
gagtgcaaaacactgatgatggcgagtggaaacatcttttctccatcgagtggaaagccg
attttaactccttctcaagatgtcattctgggctcgtactatctgacgatggagccaggg
accgtcgaagaggatgctggacgtattccgctggcggcgacggagaatgaagcgctattc
gctcaaatggatggggttagggagacccatgattggatccgtattccaaatccagactat
ggacgtgagacggtctttggaaatggcgaacataagacgattaccactacgataggaaga
attcgatttagccagatttggccaaaggaattgggcttcttgaatttccaagtagataag
agcgaactcggaaacattatcaacaatacgtataaggtttcgggtccagagcagacagta
ctttcgttggatcggcttaagaagctcggtttcgacgttgcgacgatggccggtatttca
atcggtatcgatgatatgatcatccccgagtccaagacagatatcgttgccaatgcgttt
ggcaaaatagatgaagttgaaggtcagtaccgtaagggaattattacgacaggcgaacgt
tacaataagatcatcgacatctggacggttgctactgatgaaatcaagaaggcggttttc
gaaaaacttcagacgaatggtggaaaaggtggagtgaatccggtctacgttatgatggat
tcaggtgctcgtggtaatccgaaccaggtacgccagctttgtggtacccgcggactgatg
gccaagccttcaggggagatcattgagcgaccgattctttcctcattccgggaagggtta
accgtacttgagtactttatttctactcacggagctcgtaagggattggctgataccgcc
cttaagactgcggatgctggatacctaactcgtaaactttgtgatgtggcaatggatgtt
atcatcacagaggacgactgtggtacacgtgatggaatttggaagagagctattttcgaa
ggtgatgacgaaattgtcagcctgcgtgaacgtatcgaagggcgctgtgcttgtgatgat
gttttcaatccgagcaatctagacgaaattattatcacgtcaggggagctagtctcagaa
gaggcggcgcaaagagttgaagattgcggaattgagcgcatcaaggtgatgtcgcctctg
acatcatctgcaagttacggtatcgattccaaatcttatggtatcaatcccgcatccaac
gatttggcaaagcttggtgactcagttggaattgtcgcggctcagtctattggtgagccc
ggaacgcagttaaccatgcgtaccttccacattggaggtattgccagttcggttgtgacg
gatcctcgtatcatcgccagaaatacagggcgtgttaaatatcgcggattgcgcttggtt
catatcgagactcctgaaggacctgttttcattgctctgaataagactggagcgattcag
attctggataaaaatgatcgtgagcttgaagcctatgatatcgtagttggttctgccatc
cgtattccagatggggaagagatcaaagccggtggcgtattggcaagttgggatccctac
aatattcccaatctttccgagaaggctggaaccgtgcgcttccgtgatatgattcgcggt
gttacgattaaaaaggagctcgatgaaagttctggaagaatcgcgacagtaattatcgag
cacaaggaagacctaaatccgtccgtagaaatctgtgacgattcaggtaaggtacaggcg
gtttacagtatcccaactggagcgcaggtatcggttgctgaaggcgatattattgctcaa
ggagcgcttctggcgaagactccaagacaggcttcgaagacgaaagacattaccggtggt
ttgccacgtgtcgccgagcttttcgaagcgcgccgtccaaaggaagctgcggagatggcc
cggttggatggggttgtttctttcggtggaactgttagagcgaaacgaaagttgattgtc
tccaacgaagaaacgggcactgacgaggaacatttgatcccgcatgcgaagcagatcatt
gttcaggaaggtgatgtggtgcataagggccagcacttgaccgaaggttctgcggatcct
catgaaatcctcgatattttggggcctaaccgtctgtacgagtttttgattaatgaagtg
caagaagtttatcgcctgcaaggggtgacgattaacgacaagcacatcgagctgatcatt
cgtcaaatgcttcgtaaggttcgtatctccgatccgggtgacactgagttcttctggggc
gagcaagttgagcgtacgactttcatgcgcgaaaataaccggattattgaagcaggtggg
aagccagcggaagcagaaccggtattgcttggaattacaaaagcatcgattgaaaccgag
agtttcatctcggctgcttcattccaggagacgactcgcgtattaacggacgcatcaaca
ttgagtaaaatcgacacgcttctcgggtttaaggaaaacgtaatcatgggtcacttgatt
cctgcgggaacgggtcttcctcagtatcgagatcttcgaatcacgcttccgtttggaagt
gaaatcgatgaggaggttccgaccgaggaggcagcagaatccatggttcaaaattctgaa
gtgatttag
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integrated database retrieval system
