Candidatus Pelagisphaera phototrophica: GA004_17285
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Entry
GA004_17285 CDS
T09061
Name
(GenBank) integration host factor subunit beta
KO
K03530
DNA-binding protein HU-beta
Organism
ppht
Candidatus Pelagisphaera phototrophica
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppht03032
]
GA004_17285
03036 Chromosome and associated proteins [BR:
ppht03036
]
GA004_17285
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_17285
DNA replication proteins [BR:
ppht03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
GA004_17285
Chromosome and associated proteins [BR:
ppht03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
GA004_17285
DNA repair and recombination proteins [BR:
ppht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
GA004_17285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-DNA_bdg
HU-CCDC81_euk_2
HU-CCDC81_euk_1
ALAD
HU-CCDC81_bac_2
CNOT1_TTP_bind
Motif
Other DBs
NCBI-ProteinID:
QXD32030
LinkDB
All DBs
Position
complement(3918231..3918542)
Genome browser
AA seq
103 aa
AA seq
DB search
MSNNLTKRDIVLKIFDKTKDIPQSKIQETVQMTLDIVLDALAEGRNVELRNFGVFEVQKR
KARVGRNPNRPETDVVIPTRAVVKFKAGKVLKARIKDIDLGSI
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atgtccaataatcttacaaaacgtgatattgtcttaaagattttcgataagacgaaagat
attcctcagagcaagattcaagagacagtgcagatgacgttggatatcgtgctagatgct
ttggcagaggggcgaaatgttgagttgcgcaatttcggtgttttcgaagtacagaagcgt
aaagctcgcgtcggcaggaacccgaaccgtccagaaacagatgtcgttattcccacgcgg
gctgtggtgaaattcaaggccggtaaagtcctcaaagcgagaatcaaggacatcgatttg
ggttctatttag
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