Phoxinus phoxinus (Eurasian minnow): 306987052
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Entry
306987052 CDS
T12064
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pphx Phoxinus phoxinus (Eurasian minnow)
Pathway
pphx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
306987052 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphx03019
]
306987052 (skic2)
Enzymes [BR:
pphx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
306987052 (skic2)
Messenger RNA biogenesis [BR:
pphx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
306987052 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
306987052 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
306987052
NCBI-ProteinID:
XP_079447109
LinkDB
All DBs
Position
19:12083877..12103116
Genome browser
AA seq
1251 aa
AA seq
DB search
MDKIDLPPVGPNDLPLSLLEMGCSGRFELITHPLPKNKPLPPHSTLPHGLPPTCLDLKTE
VEKRFLRDPAWLPVHDVDDAFHKFLKIIKRDKEVDSLLHCSMSPLHSGLSVVRDPTTGML
LDFTEVLLEDTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLEQIKKKSEL
EEDIDFEKDLLTVPPGLKAGMDFSDKEARTMKSEVNLLSLLSTFDDVLDALPEEKEGASQ
KEETVKLPRTNSLEDLGIKDSSNTTSQPPANTVSLTEQKKKPQEGDKGDNKKWAIPVDVT
SPCDDFYKRIPNPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQ
KHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLNPEASCLIMTTEILRSMLYNG
SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNSVEFSEWIGRI
KKRHIYVISTVKRPVPLEHHLYTGNSTKTQKELFLLLDPSGNFLTKGYYAAVDAKKERTS
KHAQSFGSKNVSQHNTTASQDRSVWQTLLNYLSQRQQTPVVAFTFSRTRCDDNARSLNSL
DLTSSIEKSEIHSFLQKSLTRLRGADRQLPQILLMRDLLKRGIGVHHSGILPILKEVIEM
LFSKGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGL
DATGTVIILCKAGVHEMGDLHAMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRS
FSENHRDTQTHEKRITELRNTLSSLPPLDTEGQLSDLLSYYHTITELRITTETLQRAVLE
SVNGLKALSVGRVVMVNNSQHHNGLGVILQVSSDAVNRTFTALIICEKGNEESAGDDQSN
KALLPIYSTALFIPEGPCSHTVQKLKLQDISAITTKTLKVIPERIIDNYNKRQQPRFRLD
PPGQAISTATQELLRLAEANPRGITTFDPVNDLHLKGVDVVEGVMRQRVLQDCLKDFHCI
HSPTFTEQFARVQERMSVQEELDQLLFLVSDQSLTLLPEYHQRIKVLEALQYVDSTGAVQ
LKGRVACQISSHELLLTELLFENTLSPLAPEESAALLSCLIFSQNTQIDPHITSTLQEGI
NQVLSVAQRIGELQRDCGIGQTAEDFVGQFKFGLTEVVYCWARGMPFAEIAALTDVQEGT
IVRCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaatagatttgcccccagttggtcctaatgatttgcccctgtctctgctggag
atgggctgctctgggagatttgagctaatcacacacccactgcccaaaaacaaacccttg
cctccacacagcacactccctcatgggcttcctcctacttgtctggacttaaaaacagag
gtagaaaagcgttttctgcgagatcctgcttggctcccagtacatgatgtagatgatgcc
ttccacaagttccttaagataattaagagggacaaagaggtggactctctcctgcactgc
tccatgtctccactgcactctggtctgtctgtcgtcagagatcccaccaccggtatgctg
ctggatttcactgaggtgttattagaggacacggggttgtctgcaaaaaattctctctca
ttacaaagacagcctggacctccgtcagagagcctgagagggagtaacacaaactatcct
tttctcccaggcggaatggaggaactaacgttagagcagattaagaaaaagtcagagctg
gaagaagacattgactttgagaaagatttgttgacggttcctccagggctgaaggctggt
atggacttcagtgacaaagaagccagaaccatgaagagtgaggtgaacctgctgtcactc
ctgtcgacatttgatgatgtccttgacgctctgccagaggagaaagagggagcgtcacaa
aaagaggagaccgttaaacttcccagaactaacagcctggaggacctgggaattaaagat
tcgagcaacactacttctcagcctccagcaaacactgtgagtctgactgaacaaaagaag
aaacctcaggagggagacaagggagacaataaaaaatgggccattcctgtggatgtcacc
tcaccctgtgacgacttctacaaacgtatccctaatccagccttcaagtatccctttgag
ctggacgtgtttcagaagcaggctattctccgactcgaagctcatgactcagtctttgtt
gccgcccacacctcagcgggcaagaccgtggtggctgaatacgcaattgcactttcccag
aaacacatgaccaggaccatttacacatcccccattaaggccttgtccaatcagaagttc
cgggacttcaagaacacgttcggtgacgtgggacttttgactggagatgtccagctgaat
cctgaagcctcttgtctcatcatgaccactgagattttgagatctatgctctataacggg
tcagaggtcattcgagatctggaatgggtcatttttgatgaggttcactatatcaatgat
gcagagagaggagtggtgtgggaggaagtgctcatcatgttgccagaacatgttagcatc
atcctgctgagtgccacggtgcctaactcagtggagttcagtgaatggatcgggcgaatc
aagaaacggcacatctatgtgatcagcacagttaagaggcctgttcctctagagcatcat
ctctacactggcaacagcaccaagactcagaaagagctcttcctgttgctggacccttct
ggaaacttccttactaaaggctactatgccgcagtggacgccaagaaggaacgcacgagt
aaacatgcgcagtctttcggctcaaagaacgtatcacagcacaacactacagccagtcag
gatcgatcagtgtggcagacgctgctgaactatctgtctcagaggcagcagactccagtt
gtggcgttcacgttctctcggacacgctgtgatgacaacgcccgctctttgaactctctg
gacctcaccagctccatagagaagagcgagatacactcgttcctccagaagagcctgacg
aggctgagaggagccgatcggcagttaccgcagatcctgttgatgcgtgatttgctaaag
agagggattggtgtccaccacagcggcatcctgccaatcctgaaggaggttattgagatg
ctcttctccaaaggtttagtaaaggtgctgtttgctacagagacgtttgccatgggtgtg
aacatgcccgccagaaccgttgtgttcgacagcatccgcaaacacgatggcacaggattc
agaaacctgctacccggtgagtatattcagatggcaggtcgtgctggcagaagaggtttg
gatgctacagggactgtcatcattctctgtaaggctggagttcatgaaatgggagacctc
cacgccatgatgctggggaaaccgacagtgctgcagtctcagttcagactgacctacaca
atgatcctaaatctgctgcgtgtagaggcccttagggttaccgacatgatgaggaggagc
ttttctgagaaccacagggatacgcagactcatgagaagagaataactgagctgagaaac
acgctctcctctctccctccgctggacacagaggggcagttatctgatttactgtcatat
taccacaccatcacagagctgcgcatcaccacagagaccctgcagcgagctgtgctggag
tcagtaaatggactcaaagccctgtctgtggggagggtggtgatggtgaacaacagccag
catcacaatggcctgggagtcattctacaggtgtccagtgatgcagtaaatcgtacattc
accgctctcattatctgtgagaagggaaatgaggagtcggcgggtgatgatcagtctaat
aaagccttacttcccatctacagcactgcactgtttattccagagggaccctgcagtcat
acggtgcagaaactgaagttgcaggacatctctgccatcacaaccaaaaccctcaaggtc
attccagagagaatcatcgacaactacaataaaagacagcagccacgcttcagacttgat
ccaccaggtcaggctatttctacagcaactcaagagctcttgcgattggctgaggccaat
cccaggggcattacgacctttgaccccgtgaatgacctgcacctgaagggtgtggatgtg
gtggagggagtgatgaggcaacgggtgttacaggactgtctaaaggacttccactgtatc
cactcgcccaccttcactgaacagtttgcgcgtgtacaggagaggatgagtgtacaggaa
gagcttgatcagcttctgttcctggtgtctgatcagtccctgacactgttgcctgagtac
catcagagaatcaaggtgttggaagctctgcagtatgtggacagcactggggcggttcag
ctgaagggacgtgtggcgtgtcagatcagcagtcatgagctgttactcactgaactcctg
tttgagaacactctgagtcctctcgcacccgaggagagcgccgccctgctgtcctgcctc
atcttctcacaaaacacacagatagacccgcacatcaccagcacgctacaggagggcatc
aatcaagtactcagtgtagcacaacgtattggtgagctgcagagggattgtgggataggt
caaactgctgaagactttgtgggccagttcaagtttggcctgactgaggttgtgtattgc
tgggcaagaggcatgccatttgctgagattgccgcgctgacggatgtgcaggaggggacg
atcgtgcgctgcatccagaggctggacgaagtcctgaaggaagtgagacaggctgctcgc
attgtaggagactccgtcctgggcagcaagatggaaagagcctcactggccatacgcaga
gacattgtgttcactgcctcgctctacacacactga
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integrated database retrieval system
