KEGG   Phoxinus phoxinus (Eurasian minnow): 306990684
Entry
306990684         CDS       T12064                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
pphx  Phoxinus phoxinus (Eurasian minnow)
Pathway
pphx03030  DNA replication
pphx03410  Base excision repair
pphx03420  Nucleotide excision repair
pphx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pphx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    306990684 (rfc4)
   03410 Base excision repair
    306990684 (rfc4)
   03420 Nucleotide excision repair
    306990684 (rfc4)
   03430 Mismatch repair
    306990684 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pphx03032]
    306990684 (rfc4)
   03036 Chromosome and associated proteins [BR:pphx03036]
    306990684 (rfc4)
   03400 DNA repair and recombination proteins [BR:pphx03400]
    306990684 (rfc4)
DNA replication proteins [BR:pphx03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    306990684 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    306990684 (rfc4)
Chromosome and associated proteins [BR:pphx03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    306990684 (rfc4)
DNA repair and recombination proteins [BR:pphx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     306990684 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    306990684 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 Rad17 AAA_assoc_2 AAA_16 AAA_22 AAA_11 AAA_30 Mg_chelatase AAA_14 SLFN-g3_helicase AAA_28 DUF815 AAA_5 AAA_24 SWIM_C RuvB_N Gp44_lid AAA_19 ResIII Cdc6_lid AAA_7 Kinesin ATPase_2 AAA_3
Other DBs
NCBI-GeneID: 306990684
NCBI-ProteinID: XP_079453980
LinkDB
Position
22:28594181..28602141
AA seq 359 aa
MQAFLKGPSSQSVKAQKPSSSSSSSGGEKKQRALPWVEKYRPKCVDEVAFQEEVVAVLKK
SLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVK
NFAQLAVAGSRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVS
RIIEPLTSRCSKFRFKPLANDIQQSRLLEICGKENLKYSKEGIEALVKVSDGDLRKAITY
LQSAARLNAEREITEQIIIEIAGVVPPKVIESLLQICYRGAFEKLELAVKDLIDQGFAAT
NVLNQLHDDIIEEKLSDKQKSVIAEKMAEVDKCLADGADEYLQLLSLGSVIMQQSAQNT
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgcaggcgtttttgaaaggaccttcctcacagagtgttaaagctcagaaaccttcatca
tcttcatcatcgtcaggcggagagaagaagcagagagctcttccctgggtggagaaatac
agaccgaagtgtgtggatgaagtggcctttcaggaggaggtggttgcagtactgaagaaa
tctctagagggcgctgatctgcccaacctgctgttctatggaccgcctggaaccggaaag
acgtccaccatcctcgcggcggccagagagctttatgggccggagctgtaccgccagaga
gtgctggagctcaacgcgtctgatgagcgagggattcaggtcgtgcgcgagaaggtgaag
aacttcgcccagctggcggtggccggctcgcgaaccgacgggaaaccttgtccgccgttc
aagatcataatcctggacgaggcggattccatgaccaacgcggctcaggcggcgctcagg
cgcacgatggagaaagagtcgcgaaccacgcggttctgtctcatctgcaactacgtcagc
cggatcatcgagccgttgacctccagatgctccaagttccgtttcaaaccgctggccaat
gacattcagcagtcgcggctcctggagatctgcgggaaggagaacctcaagtacagcaaa
gagggaatcgaggctctggtgaaggtgtcagatggagatctcaggaaagccatcacgtat
ctccagagcgccgcgagactcaacgccgagcgggaaatcactgaacaaatcatcatcgag
atcgccggggtggttcctcccaaagtgattgagtcgctcctccagatctgctacagaggc
gcgttcgagaagctggagctcgccgtgaaggatctgatcgatcaggggttcgctgccacc
aacgtcctcaaccagttacatgatgacatcatcgaagagaagttgagcgacaaacagaaa
tctgtcattgcagagaagatggccgaagtggataagtgtctggctgacggcgctgacgag
tacctgcagttattgagtctcggctcggtcatcatgcaacagtccgcacagaacacctga

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