Phoxinus phoxinus (Eurasian minnow): 306990684
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Entry
306990684 CDS
T12064
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
pphx Phoxinus phoxinus (Eurasian minnow)
Pathway
pphx03030
DNA replication
pphx03410
Base excision repair
pphx03420
Nucleotide excision repair
pphx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pphx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
306990684 (rfc4)
03410 Base excision repair
306990684 (rfc4)
03420 Nucleotide excision repair
306990684 (rfc4)
03430 Mismatch repair
306990684 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphx03032
]
306990684 (rfc4)
03036 Chromosome and associated proteins [BR:
pphx03036
]
306990684 (rfc4)
03400 DNA repair and recombination proteins [BR:
pphx03400
]
306990684 (rfc4)
DNA replication proteins [BR:
pphx03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
306990684 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
306990684 (rfc4)
Chromosome and associated proteins [BR:
pphx03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
306990684 (rfc4)
DNA repair and recombination proteins [BR:
pphx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
306990684 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
306990684 (rfc4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
AAA_lid_RFC1
Rad17
AAA_assoc_2
AAA_16
AAA_22
AAA_11
AAA_30
Mg_chelatase
AAA_14
SLFN-g3_helicase
AAA_28
DUF815
AAA_5
AAA_24
SWIM_C
RuvB_N
Gp44_lid
AAA_19
ResIII
Cdc6_lid
AAA_7
Kinesin
ATPase_2
AAA_3
Motif
Other DBs
NCBI-GeneID:
306990684
NCBI-ProteinID:
XP_079453980
LinkDB
All DBs
Position
22:28594181..28602141
Genome browser
AA seq
359 aa
AA seq
DB search
MQAFLKGPSSQSVKAQKPSSSSSSSGGEKKQRALPWVEKYRPKCVDEVAFQEEVVAVLKK
SLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVK
NFAQLAVAGSRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVS
RIIEPLTSRCSKFRFKPLANDIQQSRLLEICGKENLKYSKEGIEALVKVSDGDLRKAITY
LQSAARLNAEREITEQIIIEIAGVVPPKVIESLLQICYRGAFEKLELAVKDLIDQGFAAT
NVLNQLHDDIIEEKLSDKQKSVIAEKMAEVDKCLADGADEYLQLLSLGSVIMQQSAQNT
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgtttttgaaaggaccttcctcacagagtgttaaagctcagaaaccttcatca
tcttcatcatcgtcaggcggagagaagaagcagagagctcttccctgggtggagaaatac
agaccgaagtgtgtggatgaagtggcctttcaggaggaggtggttgcagtactgaagaaa
tctctagagggcgctgatctgcccaacctgctgttctatggaccgcctggaaccggaaag
acgtccaccatcctcgcggcggccagagagctttatgggccggagctgtaccgccagaga
gtgctggagctcaacgcgtctgatgagcgagggattcaggtcgtgcgcgagaaggtgaag
aacttcgcccagctggcggtggccggctcgcgaaccgacgggaaaccttgtccgccgttc
aagatcataatcctggacgaggcggattccatgaccaacgcggctcaggcggcgctcagg
cgcacgatggagaaagagtcgcgaaccacgcggttctgtctcatctgcaactacgtcagc
cggatcatcgagccgttgacctccagatgctccaagttccgtttcaaaccgctggccaat
gacattcagcagtcgcggctcctggagatctgcgggaaggagaacctcaagtacagcaaa
gagggaatcgaggctctggtgaaggtgtcagatggagatctcaggaaagccatcacgtat
ctccagagcgccgcgagactcaacgccgagcgggaaatcactgaacaaatcatcatcgag
atcgccggggtggttcctcccaaagtgattgagtcgctcctccagatctgctacagaggc
gcgttcgagaagctggagctcgccgtgaaggatctgatcgatcaggggttcgctgccacc
aacgtcctcaaccagttacatgatgacatcatcgaagagaagttgagcgacaaacagaaa
tctgtcattgcagagaagatggccgaagtggataagtgtctggctgacggcgctgacgag
tacctgcagttattgagtctcggctcggtcatcatgcaacagtccgcacagaacacctga
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