Phoxinus phoxinus (Eurasian minnow): 306995713
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Entry
306995713 CDS
T12064
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
pphx Phoxinus phoxinus (Eurasian minnow)
Pathway
pphx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
306995713 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphx03019
]
306995713 (skic3)
Messenger RNA biogenesis [BR:
pphx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
306995713 (skic3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_19
TPR_14
TPR_1
TPR_16
TPR_8
TPR_17
TPR_11
TPR_12
TPR_CcmH_CycH
CFAP70_TPR_C
CFAP70_mid_TPR
TPR_9
ANAPC3
TTC22_N
TPR_6
CABIN1_N
TPR_MalT
HAT_Syf1_CNRKL1_N
Fis1_TPR_C
TPR_Psidin_N
ARM_TT21_N
ARM_TT21_2nd
TPR_15
ARM_TT21_C
TPR_21
HAT_PRP39_N
Coatomer_E
CadC_C
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
306995713
NCBI-ProteinID:
XP_079463646
LinkDB
All DBs
Position
3:complement(31235905..31263224)
Genome browser
AA seq
1574 aa
AA seq
DB search
METSAKMSSKEVKAELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAATELQ
QPDQAQIAYRKAAELEPEQLLAWQGLANLYEKGDQADFKAELPKIYQKLITLYETSDKAK
CFEVSKKLVEIYQSEKNYLEVAKVWRRLIQMNEGEEGVEDSELLELWKEMTRLLQDTIED
QDNETQQHLISAFDKALLLTVDVPSEAHRSLSEDYIKCLSKLPHEVAKLKEFCDATLSCY
PTQSHPLEALSEHYIKTGDCTEEAVRCFHRLSELDPNNSHAHFGLGIKACQDKKYEDALK
SIGLGLKRMRSSIIGWYNFALAQLKMHKYSDSATSSSQGLKSSVGNSDDWTQKLQRLRLD
ALVRTGRDQDAEEALQILTQISDAKNDPVLLALKGRAHLQKGQTDEAFQVFAELLNSHPG
SVEGLTLKGLTHVAKEQLKQAEESFLEALSRSPDNGELYFLLGRLYWNMGEEIQRDRSKA
HTHLLKAAKLDPYLGSVFRFLGHYYREVAKDQGRARGCYKRAFELDSSDAEAGAATVDLS
MEQGDMDSALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIADLQAALRADPQDW
VCWECLGEAYLNRRSFTAALKAFDKAHLLQPTSIYSLYQTAAIKQILGRFKEAASEYRQI
LEQEEYVPALKGLGECLLALAKSALDDYLDGRAVDLIQNAIHYLFSAVKQRPDLSCLWKL
LGDVCTTCRTVSANRAKVLVPGALCGMDPPDQSHTLDQRQLLTLGERCFGHALKLMPEAP
SLWCDLGMNYYHQSKLLSCLYSEEDPQPLLEKALQCVKKAIMLDSANHKYWNALGVVAMA
KGIENFALAQHSFIKSVKAEPNNVVAWTNLGALYLKKGNIELSHEAFKIAQSLEPLYVNC
WIGQALIAETVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDRSNRDSELYLYNIV
QMNAVSAAQVALSKYTERIQTDPDAFIMLGYLNTHLQLKKQATEAYRRAVELLQASPHTD
KLSFALRGFGRALSDDGQWEEAVRIYSSTPLEELHDLIGLALTCFKIRRLPESIQAYEKA
LAVASSEKEKACILTALALIQHTLGSMDHAKTLLFKCSMLKEPIPESLQCLCALGLVHGD
VTLASATLTELLKLGEPAGGAVEEYCLLTCTLLALQGNFSGVHREASRAIHRNPGNPSLW
ALLSRLVPQYCPNKASGGAVAGSVACHASLTLGKRALLYSGVNQLASGRHSGEDRRCNAL
KTIQRAVMLCPDDPAGWAGLMAACHTENTACLLAGSAPRREDLERAHMTLVSEKVKGLQG
EDGLLAQALEGWVLQQAVTGLKQSGQYDQAETLCSQVLSVSPEHPVVFLMLRQVQCERLL
LSEAGNCVPQAVLDQLSAAVMANLTSVSAWHWLAEVYRSQGLLAQASVAYRQSLQLASQL
GDHGGKTSSLLRLALLALTPCLAGVCVSDWKDLVLEASAEVLKMGNSPVALLFQALLQFS
IKMGSRETRRLLERIVYGSASGSSETIASVACWYLLRHLHAKDDLELIDTLLLKATAAGD
SRLVDFHRRLYPSS
NT seq
4725 nt
NT seq
+upstream
nt +downstream
nt
atggaaacttctgccaaaatgtccagtaaagaagtgaaagctgagctgaaaagtgcaaga
gaagccattaaaaataaagagtttaaagaagctttgaaacattgtaaggctgttctcaag
cttgagaagaataactataatgcctgggtgttcattggagtggcagccacagagctgcag
cagccggatcaggcacagatcgcctacagaaaagccgctgaactggagccagagcaactg
ctggcatggcagggtttagcaaatttgtacgaaaaaggtgaccaggcagatttcaaagcc
gagctgccaaagatttaccagaaacttattacactgtatgaaacctcagacaaagcaaaa
tgtttcgaagtgagcaagaaattggtggaaatctatcagtctgagaagaactatttagag
gtggccaaggtgtggcggaggttaatccagatgaacgagggagaggaaggggtggaggat
tcagagctgctggagctgtggaaggagatgaccagactcctgcaagacactattgaggat
caggacaatgagactcagcagcacctgatatcagcatttgataaagctttgctactgaca
gtagatgtgcccagtgaagcccacaggagcctctcagaggattacattaaatgtctttct
aagcttcctcatgaggtggccaagctaaaagagttttgtgatgccacactgtcctgctat
ccgacacaatctcaccctttagaggccctcagtgagcactacatcaaaacaggtgactgc
actgaggaagctgtccgttgtttccaccgtctctcggaactggatcctaacaactcacat
gctcactttggtcttggcattaaagcttgtcaggataaaaaatatgaggacgccctcaaa
agtattggtctgggactgaagcgtatgcgttcttccatcattgggtggtataattttgct
ctggctcaactaaaaatgcataaatactctgacagtgccacatcttccagccaagggctg
aagtcgagtgtggggaattctgatgattggactcagaagctgcagaggttgagactggat
gctttggtgaggacaggaagagaccaggatgctgaagaagctctgcagatacttactcag
atttcagatgccaaaaatgacccagtgcttttagcgttgaaaggaagagctcacttgcaa
aaaggccaaactgatgaagcatttcaggtttttgccgagctgctaaactctcacccagga
tctgtggagggtctcactctgaaggggctgacgcatgttgctaaagaacagctcaaacaa
gctgaggagagctttctggaggctttatccagaagcccagataatggggagttatacttt
ttgctgggacgcctgtactggaacatgggagaggaaatacaaagggaccgtagcaaagcc
catacacatttgcttaaggctgctaaactggacccgtatcttggttcagtgtttcgtttc
ctgggtcattactacagagaggtggcaaaggatcagggcagagccagaggctgctataag
agagcatttgagctggattcctctgatgcagaggctggagcggctactgtagatctcagc
atggaacagggagacatggactcagctctgactgttctgcagtctgtgaccgagagagcc
actcctggctctgctaaatgggcctggatgaggagaggtctctaccacctcaagattggc
cagcaccaacaggccattgcagatctgcaggcggcgttgagggctgatcctcaggactgg
gtgtgctgggaatgtttaggtgaagcttacctgaaccgcaggagtttcacagctgccctg
aaagcctttgataaagcacatcttcttcagcccacctcaatctatagcctctatcagacg
gccgccatcaaacagatcctgggccggtttaaagaggctgcttcagagtacaggcagatc
ttggagcaggaggaatatgtgccggcactgaaaggtctgggtgaatgcttgttagccttg
gctaaaagtgcactggatgactatcttgatggaagagctgtagatttaatacagaatgcc
atccattacctcttcagtgctgtaaagcaaaggccagacctgtcatgtctgtggaagtta
ctaggtgatgtctgcaccacctgcagaactgtgtccgcaaatcgggccaaagtactggta
cctggagctctttgtgggatggatccacccgatcagagccatacactggaccagagacag
ctcctcactcttggagaaaggtgctttggtcatgcattgaaactgatgccggaggccccc
agtctgtggtgtgacctcggcatgaactactaccaccaatccaaactgctcagctgcctg
tattctgaggaggatccccagcctctgctggagaaagccctgcagtgtgtgaagaaggcg
atcatgctggacagtgctaatcacaaatactggaacgcccttggggtcgtcgccatggca
aaagggatagaaaactttgcacttgcacaacacagtttcatcaaatcagtaaaagctgag
ccaaataatgtggttgcatggactaaccttggtgctttgtatctgaagaagggaaatata
gagctctctcatgaagctttcaagattgctcagtcgctagagcccctctatgtgaactgc
tggattggacaggccctcattgctgagactgttggcagttatgacaccatggaccttttc
agacacaccacagaactgagcactcatactgagggagtgaagggttatgcgtactgggtt
tgctccacactgctggaccggagcaacagagactcagagctctacctctacaacatagtt
cagatgaacgccgtctctgctgcccaggtggctctgagcaagtacactgagagaattcag
accgaccctgacgccttcatcatgctcggatacctgaacacacacctgcagctgaagaaa
caggccactgaggcatatcgcagagctgtcgagttgcttcaggcgtcccctcacacagac
aagctcagctttgctctgaggggtttcggacgtgccctcagtgatgatgggcagtgggaa
gaagcagtgcgtatttattcctccacaccattagaggagctgcatgatctcatcgggctg
gcgctcacctgtttcaaaatcagacgcctgccagagagcattcaggcctatgagaaagcc
cttgcagttgcctctagtgagaaagaaaaggcctgtatactcactgcactggccctgata
cagcacacgctgggcagcatggatcatgccaaaacacttctcttcaagtgctccatgctt
aaagagcccattccagagagcctgcagtgtctctgtgctctgggtttggttcatggggac
gtgaccctggcaagtgctacgctcaccgagctgctgaaactgggggaacctgcaggaggc
gctgtggaggagtactgtctgctcacttgcaccctgctggccctgcagggcaactttagc
ggtgtacatagggaggcttctagggctatacacaggaacccagggaatccatctctctgg
gctcttctctccagactggtcccacagtactgccccaacaaagccagtggaggagctgtg
gccggcagtgtggcatgtcatgccagcttgacacttggaaagagggcgttgctgtacagt
ggagtgaatcagttggcatcaggccgccactctggtgaggacagaagatgcaacgctctg
aaaacaatccagagagctgtgatgctgtgcccagatgatcccgctggttgggcggggcta
atggccgcctgtcacacagagaacactgcatgcttactcgcaggctccgcccctcgcaga
gaagatctggagagggcgcacatgactctggtgtctgaaaaagtgaagggcctgcaggga
gaggacgggctcttggctcaggctctggagggctgggtactgcagcaggccgtgactgga
ctcaaacagagtggtcaatatgaccaggcagagactctttgctcccaggttctgagtgta
tctccagagcatcctgtggtgttcctgatgttgaggcaggttcagtgtgagcgcctcctg
ctgtctgaggccggtaactgtgttcctcaagcggtgctggatcagctcagtgctgctgtc
atggccaacctcacttctgtgtccgcctggcattggttggcagaagtgtaccgctctcag
ggcctgctggctcaggcctctgtggcttatagacagagtcttcagctggcgtctcagctg
ggtgatcacggcgggaagacgagcagcctgctccgactagccctgctggcgctcacgcca
tgtttggctggtgtctgtgtctctgactggaaggatctggtgttggaagccagtgctgaa
gtcttaaaaatgggcaactcaccagtagctttgctcttccaagccttactgcagttctcc
ataaaaatgggctccagggaaacccgtcgcctgttggagaggattgtttatggttcagcc
tcaggcagctctgaaactatagcgtcggtggcatgttggtacctcctgcgtcacctgcac
gccaaagatgacctggagctgattgataccctgttgttgaaggctacagcagcaggagac
agcagactggtggatttccacagacgcctttacccatccagctga
DBGET
integrated database retrieval system
