Phoxinus phoxinus (Eurasian minnow): 307000105
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Entry
307000105 CDS
T12064
Symbol
tfdp1b
Name
(RefSeq) transcription factor Dp-1b isoform 1
KO
K04683
transcription factor Dp-1
Organism
pphx Phoxinus phoxinus (Eurasian minnow)
Pathway
pphx03083
Polycomb repressive complex
pphx04110
Cell cycle
pphx04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pphx00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
307000105 (tfdp1b)
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
307000105 (tfdp1b)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
307000105 (tfdp1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pphx03000
]
307000105 (tfdp1b)
03036 Chromosome and associated proteins [BR:
pphx03036
]
307000105 (tfdp1b)
Transcription factors [BR:
pphx03000
]
Eukaryotic type
Helix-turn-helix
Fork head/winged helix cell cycle-controlling factors, DP
307000105 (tfdp1b)
Chromosome and associated proteins [BR:
pphx03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
307000105 (tfdp1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DP
WHD_E2F_TDP
Motif
Other DBs
NCBI-GeneID:
307000105
NCBI-ProteinID:
XP_079471507
LinkDB
All DBs
Position
6:696461..715900
Genome browser
AA seq
386 aa
AA seq
DB search
MAKDAGLKETNGEIKLFVNQTLSPGKPAGVLSFLTVHPASISAVKQILPKTLTGAHVLPH
VVMGTPQRTVLLPGPRSPNTHFHTPQTQNTLESSPWSTGRSRKGDKSGKGLRHFSMKVCE
KVQKKVVTSYNEVADELVTEFSSGDTHISPNEAHVYDQKNIRRRVYDALNVLMAMNIISK
DKKEIKWIGFPTNSAQQCEDLQVERQRRLERIKHKQSQLQELIVQQIAFKNLVQRNRQAE
RQSRVCPSPNTLIHLPFIIIHTSRRSVIDCSISNDKFEYLFNFDSMFEIHDDVEVLKRMG
LAFGLESGRCNPEQLKIARTLVPKALQPYLTEMAQGAVNQLIGKLSHVAPDPSSSNGSRD
ATPSSIMEDEEDEDEEEDSDEDEDDD
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagatgctggactcaaagaaactaatggagagataaagctgttcgtcaaccag
actctgagtccggggaaacctgcaggtgtgttgtcgttcctgaccgttcatccggcgtcc
atctctgcggtcaaacagatcctgcctaaaaccctcaccggcgctcatgtgctgccacat
gtggtgatgggaacccctcagaggacggtcctgttacccggtccacgctcgcccaacaca
cacttccacacgccgcagacccagaacacactcgagtcctcgccctggtccaccgggcgc
agcaggaaaggcgataagagcgggaagggtttgaggcacttctccatgaaagtgtgtgag
aaggtgcagaagaaagtggtgacgtcatacaacgaggtggcagacgagctggtgacggag
ttcagctccggtgacacacacatctccccgaacgaggcgcacgtgtacgatcagaagaac
atccgcagacgagtgtacgacgcgctcaacgtcctgatggccatgaacatcatctccaaa
gacaagaaggagatcaagtggatcgggttccccaccaactcggctcagcagtgtgaggat
ctgcaggtcgagcggcagagacgactcgagagaatcaaacacaaacagtctcagctgcag
gagctcatagtgcagcaaatcgcgtttaagaatctggtgcagcgcaaccgtcaggcggag
cgtcagagccgtgtgtgtccctctcccaacacactcatccacctgcccttcatcatcatc
cacaccagcaggaggagcgtcatcgactgcagcatctccaacgacaagttcgagtacctg
tttaacttcgacagcatgttcgagatccacgatgacgtggaggttctgaagcgcatgggt
ctggcgttcggcctggagtcgggtcgctgtaacccggagcagctgaagatcgccagaacc
ctcgttcctaaagccctgcagccctacctcacagaaatggcgcagggtgctgttaaccag
ctgatcgggaagctctcccatgtggccccagacccgtccagctcaaacggctcccgagac
gcgacgccatcatcaatcatggaggatgaagaagacgaggatgaggaagaagactctgat
gaagacgaagatgatgactag
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