Phoxinus phoxinus (Eurasian minnow): 307004813
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Entry
307004813 CDS
T12064
Symbol
apex1
Name
(RefSeq) DNA repair nuclease APEX1
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
pphx Phoxinus phoxinus (Eurasian minnow)
Pathway
pphx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pphx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
307004813 (apex1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphx03400
]
307004813 (apex1)
Enzymes [BR:
pphx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
307004813 (apex1)
DNA repair and recombination proteins [BR:
pphx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
307004813 (apex1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
307004813
NCBI-ProteinID:
XP_079480441
LinkDB
All DBs
Position
9:complement(6184308..6188738)
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AA seq
310 aa
AA seq
DB search
MPKRAKKNEEAVDGETGNGTAPAKKEKKGKEPEAPILYEDPPDKMTSKDDRAANMKITSW
NVDGLRAWVKKNGLDWVRTEDPDVLCLQETKCAEKALPSAITEMPEYPHKYWAGSEDKEG
YSGVAMLCKTEPLSVTYGIGKEEHDKEGRVITAEFPSFFLVTAYVPNASRGLVRLDYRKT
WDVDFQAYLSSLDQRKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREGFTQLLEAG
FTDSFRELYPEQANAYTFWTYMMNCRSKNVGWRLDYFVLSAALLPGLCDSKIRNTAMGSD
HCPITLYLAV
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaagagccaagaagaacgaggaagctgtggatggggagactggcaatggaact
gcacctgcaaagaaagagaaaaaagggaaagagccagaggccccaattctgtatgaagat
cctccagataagatgaccagtaaagatgaccgtgcagccaacatgaaaatcacctcctgg
aatgtggatggtctgcgggcatgggtcaaaaagaacggccttgattgggtacgtacggag
gacccagacgtgctgtgtctgcaggaaaccaagtgcgctgagaaagccctgccgtctgct
atcactgaaatgccagagtatccccacaagtattgggctgggtcagaggataaagagggt
tacagtggagtggccatgctctgcaagaccgaacccctcagtgtcacctatggtattggt
aaagaggagcatgataaagagggtcgagttatcactgctgagtttccatctttcttcctg
gtcacggcgtatgtgcccaatgccagccgtggtttggtgcgtctggactaccgcaagacc
tgggacgtggatttccaggcctacctgagcagcttggaccagcgcaagcccctggtgctg
tgtggcgatctgaatgtggcccatcaagagatcgatcttaaaaaccccaagggtaaccgc
aagaacgcaggcttcaccccagaggagcgtgagggcttcactcagcttcttgaagccggt
ttcaccgacagtttccgggaactgtatccggagcaagctaatgcctacaccttctggacc
tacatgatgaactgtcgatccaaaaacgtcggctggcgtttggactactttgtgctgtcg
gccgcattgctcccgggtctgtgtgacagcaagatccgaaacacggccatgggaagtgac
cactgtcctattaccctgtatttggctgtgtag
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