Phoxinus phoxinus (Eurasian minnow): 307009225
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Entry
307009225 CDS
T12064
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pphx Phoxinus phoxinus (Eurasian minnow)
Pathway
pphx03013
Nucleocytoplasmic transport
pphx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pphx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
307009225 (srrm1)
03015 mRNA surveillance pathway
307009225 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphx03019
]
307009225 (srrm1)
03041 Spliceosome [BR:
pphx03041
]
307009225 (srrm1)
Messenger RNA biogenesis [BR:
pphx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
307009225 (srrm1)
Spliceosome [BR:
pphx03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
307009225 (srrm1)
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
307009225
NCBI-ProteinID:
XP_079488955
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Position
13:20694366..20708120
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AA seq
934 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDEDKREKEIKERAQSKSPKRRKSRSPVKRDRKS
SPPRSPRRKPSPAALPPSSPPNNKEEPKQEPDQSESSKPEPLIEEASSTSDLVVEVKPDS
VSEAVKESSPDKTSKSEDRPKPRDKDGRRDRPRHRSRSRSPRSRKRPRSRSRSFSPRRRS
PRRRISPRRRSPPRRRPPSRHRRSRSPVRRRRSRSRSSSGSSSSRSPHKRAGKRRSATPP
RKPPRRLDPVSPSRRRGRSPSGPDTSPSAVKHRPGGRNDTPSPKPRRSDASESEEEKVGK
GSTADSVQQRRQYRRQNQQSSSDTGSSSSSEDEGPRRQNRGAGARNGEIRRRRSHSPASP
RRRHRDASPRKRRSPSPAGRRHRSPSPVRRRRSPSPPPRRRSPSPPHRRFTPPIQRRYSP
SPPPAQKRRLSGSPPKRRRSPSPVSKNRGSPSPLSKRRGSLSPVSKRRGSPSPLSKRRGS
PSPVTKRRGSPSPMSKRRGSPSPVSKHRGSPSPMSKRRPSPSPATKRRASPSPVTKRRAS
LSPVAKRRGSPSPLAKRRSSRSPKRNRGSSPGKRRTPPISASPPPRHRRSSPNPSAAQRG
RDARSSPPAHATRVSSSPPARYGPSSLSPQRQRRQASPSHSTRPIRRVSRTPEPRKSQRG
SQSPQPVRRQVSHSPSASPPPPPTAHKRPASVSPSRSASRSPPPPAKKNSSVSPSPSPNK
NSDVEGGKKKKKKKEKKHKKEKKHKKHKKQKKEKSGEEKSGGAAGAHGQEAEPDSDQKKE
SESEVEDSLDDLEKHLREKALRSMRKAQMSPSQS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggcaccagtgcggagcaggataaccgcttcagcaacaaa
cataagaagctgttgaagcagctgaagtttgcagaatgtctggagaagaaggtggatatg
accaaggtcaacctggaagtcatcaagccctggatcacccagcgcgtgacagagatcctt
ggctttgaggatgacgttgtcatcgaatttgtcttcaaccagctggaggaaaagaacccg
gatgggaagatgatgcagattaatttgacagggtttttgaacgggaagaacgctcgagaa
ttcatgaaggacctttggccgctgttactaagtgcccaggagaacatcgcaggtatcccg
tctgctttcctggagcaaaagaaagaggagatcaaacagagacagatcgaacaggagaaa
cttgcctctctgaaaaaaattgatgaagataaaagggagaaggagatcaaagagcgagct
cagtcaaaaagccctaaacggaggaagtcccgctcccctgtgaagcgtgaccgtaaatcc
agtccccctcgctctcctcgccgaaaaccgagcccggctgccttgcctccttctagtccg
cccaataataaagaagaaccaaagcaagaaccggaccaatcagagagctccaaaccagag
cctctcattgaggaggcttcctctacaagtgatctggtggttgaggtgaagccggactcc
gtgtctgaggctgtgaaagagtcctctccagacaaaacgtcaaaatcagaagacaggccc
aaacccagagataaggatggacggagagatcgccctcgccaccgctctcgctctcgatca
cctcgttctcgcaaacgacctcggtcccgctctaggtcgttctctcctcgccgcagaagt
cccaggaggcgaatctctccgagacgtaggagcccccctagacggcgacctccctctaga
cataggcgtagccgttcacctgtccgcaggcggcgctctcgctcccggtcctcttcaggc
agctcctcctctcggtcaccccataagagagcaggaaagcgtaggtcagctacaccgccc
agaaaacctccacgccgcttggaccccgtcagcccctccagaagacgaggccgcagtcct
tcaggaccagacaccagcccttcagctgtgaagcacaggcctggtggaagaaatgacact
ccttctccaaaacccagacggtccgatgcatcagagtctgaagaggagaaggtgggcaaa
gggtcaacagcagattctgtccagcagcgtcgtcagtatcggagacagaatcagcagtcc
tcttcagacactggttcatcctcttcctctgaagatgaaggtccaaggaggcaaaataga
ggggcaggtgccaggaatggagaaatcagaaggcggcggagccattcacctgcatcacca
cggaggcgacacagagatgcatccccaagaaagagacgttctccatcacctgctggccgt
agacatcgttcaccatctcctgttcgccgccgcaggtcaccctctcctcccccaaggcgc
agatctccatctccacctcaccggcgtttcactcctcccatccagcgcagatacagtccc
tcccctcccccagctcaaaaaagacgcttatcagggtctcctcccaagcgtagaaggtct
ccatcccctgtatccaagaatagagggtctccttcacctctgtccaagaggagaggatct
ctttcacccgtttcaaaacgcagaggttctccttcacccttgtccaagaggagagggtct
ccttcacccgttacaaaacgcagagggtctccttcacccatgtccaaacgcagagggtct
ccatcacctgtgtccaagcatagagggtctccttcacctatgtccaaacgcagaccgtct
ccctcgccagcgaccaagcgcagggcatctccttcaccagtgaccaagcgcagggcatct
ctctcgccagtagcgaagcgtagaggatcgccctcccctttggcaaaacgtcgctcctct
cgatcccccaaacggaaccgtggcagtagtccaggaaaaagacgtactccgcccatttct
gcttcacctccaccccgccaccgtagaagctctccaaatccctctgcagcccaacggggc
agagatgcccgctcctctccccctgcccatgctactcgagtgtcttccagtcctccggct
cgatacggcccctcgagtttatccccgcagagacaaagacgccaggcgtccccgtctcac
agcaccagacccattcgcagggtttcccgcacaccagaaccacgcaaatctcagagaggt
tctcagagcccccagcctgtaaggagacaggtttcacattcaccatctgcttctcctcct
cctcctcccacggctcacaagcgacctgcttcagtctcaccctctcgctctgctagccgt
tctccacctccacctgccaaaaagaacagcagtgtctccccgagcccatcacctaacaag
aactcagatgtagaaggtggtaagaagaagaaaaagaagaaagagaagaaacacaagaaa
gagaaaaaacacaagaagcataagaaacagaagaaggagaagagtggagaagaaaagagt
ggaggggcggcaggagcacacggacaggaagcagagccagactctgaccagaaaaaggaa
tcagagagtgaagtagaagacagtttggatgatctggagaagcacctacgtgagaaagct
ctccgctcaatgaggaaggcccagatgtctccatctcagtcctga
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