Phoxinus phoxinus (Eurasian minnow): 307011600
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Entry
307011600 CDS
T12064
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform 1
KO
K19719
collagen type II alpha
Organism
pphx Phoxinus phoxinus (Eurasian minnow)
Pathway
pphx04510
Focal adhesion
pphx04512
ECM-receptor interaction
pphx04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pphx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
307011600 (col2a1a)
04518 Integrin signaling
307011600 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
307011600 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pphx00536
]
307011600 (col2a1a)
Glycosaminoglycan binding proteins [BR:
pphx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
307011600 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
307011600
NCBI-ProteinID:
XP_079493613
LinkDB
All DBs
Position
15:complement(23900671..23923182)
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AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVATQCVLLSLVRCQQEDDQEELGSCIQDGQQYADHTVWKPEPCRVCV
CDSGAVLCDEVICEDLRDCANPIIPIGECCPICPAETDEPIESIGAKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGTRGEKGPKGEKGNIGPRGRDGEPGTPGNPGPSGPPGPPGPNGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA
GALGPRGPSGPPGKAGSDGEAGKHGKPGERGPTGPQGARGFPGTPGLPGIKGHRGHPGID
GAKGESGAAGAKGEAGSNGESGAPGPMGPRGLPGERGRPGATGSAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGEGGTPGSPGPSGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVL
GPQGSPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GLTGPKGGTGDPGRTGESGLPGARGLTGRPGDAGPQGKVGAPGSAGDDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKTGEKGLLGRPGLRGLPGKDGETGAAGPPGPAGVVGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGVTGPRGERGFPGERGGAGSQGLQ
GPRGLPGTPGTDGPKGAIGPAGGAGAQGPPGLQGMPGERGAVGISGAKGDRGDSGEKGPE
GAPGKDGSRGLSGPIGPPGPSGPNGAKGETGALGPNGAPGSRGAPGDRGEIGAPGPAGFA
GPPGADGQPGIKGEQGESGQKGDGGSPGPQGPSGAPGPVGPTGITGPKGARGAQGAPGVT
GFPGAAGRVGSPGPNGNPGPAGPAGSAGKDGPKGVRGDAGPPGRAGDAGLRGPAGTPGEK
GESGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSSGDR
GPPGPVGPPGLSGPAGETGREGNPGSDGPPGRDGATGVKGERGNTGPIGAPGAPGAPGAP
GSVGPVGKQGDRGENGPQGPAGPPGSAGARGMVGPQGPRGDKGEAGEAGERGLKGHRGFT
GLQGLPGPAGSPGDQGAAGPSGPSGAKGPSGPVGPAGKDGSNGQPGPIGPPGPRGRSGES
GPSGPPGNAGPPGPPGPPGPGIDMSAFAGLSQTEKGPDPLRYMRADEASSSLRQHDVEVD
ATLKSINSQIEDLRSPDGSRKKPARSCRDLKLCHPEWKSGDYWVDPNLGSSADAIKVFCN
METGETCVKPSTPKIPRKNWWTSKGKGLKHVWFGESMNGGFHFSYADSSQTPSTTSIQMN
FLRLLSTEATQTITYHCKNSVAYMDQATGNLKKAVLLQGSNDVEIRAEGNSRFTYGVVED
GCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacgcaatgcgttttg
ctatcccttgtaagatgtcaacaagaagatgaccaggaagagttaggcagctgcatccaa
gatggccagcagtatgcagaccatactgtatggaagccagaaccatgccgtgtctgcgtg
tgcgactctggggcagtgctgtgtgacgaggtcatctgtgaggacctgagagactgtgcc
aatcccatcattccaatcggagagtgctgtcccatctgcccagctgaaaccgacgagcct
atcgagtcaattggtgcaaagggacagaaaggagaaccaggcgatattgcagatgtagtt
ggaccaagaggacctgctggcccaatgggacccccaggagagcaaggaacacgtggtgag
aaaggacctaagggtgagaagggaaatatcggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccctctggaccccctgggccaccaggacctaatggactcgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggcaggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcccggtccctctgga
gcacctggcccacaaggtttccaaggcaaccctggagagactggtgaacccggccctgct
ggtgcccttggaccccgtggcccatctgggccccctggaaaagccggaagtgatggtgag
gctggcaaacatggcaaacctggtgagcgtggacccacagggcctcagggagcccgtgga
ttccccggaactcctggccttcctggaatcaagggacacagaggtcacccaggtattgat
ggagctaaaggagagtccggtgctgcaggtgctaagggtgaggcaggttctaacggtgag
agtggtgctcctggaccaatgggtccacgtggtctgcccggtgagagaggtcgtcctggt
gcaactggttctgctggtgcccgtggtaatgatggtctgcctggtcccgctggtcctcct
ggtcctgttggtcctgctggtgctccaggtttccctggatctcctggttctaagggtgaa
gctggtcccactggagctcgtggacctgagggcgcacaaggaccccgtggagagggcgga
actcctggatcacctggaccttctggtgcatctggtaaccctggtactgatggtattcct
ggagctaaaggatctgctggtgcttctggtattgctggtgcccctggtttcccaggaccc
cgtggcccgcccggacctcagggagctactggacctcttgggcctaagggacaatctgga
gaccctggtattccaggatttaaaggcgaggctggacccaagggagagcgtggtgtttta
ggacctcagggatcccctgggccatctggagaggaaggaaagagaggaccaagaggagag
cctggttctgccggacctctcggaccccctggagagagaggagctccaggtaaccgcgga
ttccctggtcaggatggtctagctggagcaaagggtgcacctggtgatcgtggtgttcca
ggtttgaccggaccaaaaggagggactggagatcctggccgcactggcgagtctggtctt
cctggagccagaggtctcactggacgccctggtgatgctggacctcaaggaaaagttgga
gcacctggttctgctggtgatgatggacgccccggtcctcctgggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggacctaagggagccaatggtgaacctggaaaa
actggagagaaaggacttcttggaaggcctggtcttagaggtttgcctggtaaagatgga
gagactggagctgctggtccacctggccctgctggtgttgttggtgagagaggagagcaa
ggtcagcctggtccatctggcttccagggtctgccaggacctactggagcccccggagag
cctggtaaacctggtgaccagggtgttcctggagagggtggtgctgccggtgtcactgga
ccaagaggtgaacgtggtttccctggtgagagaggaggtgctggctctcagggtctccag
ggaccaaggggacttccaggaactcccggaactgatggacctaagggtgcaattggacca
gctggtggtgctggagctcagggccctcccggtctgcagggcatgcctggtgagagagga
gctgttggaatatctggagctaaaggtgacagaggtgacagtggagaaaaaggacctgaa
ggtgctcctggcaaagatggttcaagaggtttgagtggtccaattggtccacctggtcct
tctggtcccaatggcgcaaagggtgaaactggtgcccttggcccgaatggtgctcctggt
tctcgtggtgcccctggtgatcgtggtgagattggtgcacccggacctgctggctttgct
ggaccccctggtgctgatggccagcctggaattaagggagagcagggtgagtcaggacag
aaaggtgatggtggatcccctggaccccaaggaccatccggagcacctggcccagtgggc
ccaactggtattacaggacccaaaggagcacgtggagcccaaggagcccctggtgtcact
ggtttcccaggtgctgcaggaagagttggatcacctggccccaatggtaaccctggtcct
gctggccctgcaggttctgctggtaaggatggtcctaagggagttcgtggtgatgctggt
cccccaggcagagcaggagatgctggactgcgtggacctgctggtacacctggagagaag
ggagagtctggagaggatggtcctcctggtcctgatggtccatctggccctgctggtctt
gctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaaggggtttcccagga
ctcccaggaccctctggtgagcctggcaaacagggagcatctggttcttctggtgaccgt
ggacctcctggccctgtaggacctcctggattgtctggacctgctggcgagactgggcgt
gagggtaaccctggatctgatggtccacctggtagagatggtgctactggtgtgaagggt
gagcgtggtaacactggcccgattggcgctcccggagctcctggtgcccctggtgctcct
ggctccgttggtccagttggcaaacagggagacagaggagagaatggcccacaaggacct
gctggcccccctggatcggctggagctagaggcatggttggaccccaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtctgaagggacacagaggattcacc
ggtctgcagggtctgccaggacctgcaggttctcctggagaccagggtgctgccggacct
tctggaccaagtggcgctaagggaccatccggacctgttggaccagctggtaaggacggt
tctaatggtcagcctggacccattggaccacctggacctcgtggacgctctggagagtct
ggcccaagtggtccacctggtaacgctggacctcctggtcctcctggtccccctggccct
ggcattgacatgtccgccttcgctgggttgtctcagactgagaaaggacccgatcctctg
cgttacatgcgtgccgacgaggcctccagctctcttagacaacatgatgtggaggtggat
gccacattgaagtcaatcaacagccagatcgaggatctccgcagcccagatggctcccgc
aagaaacctgcacgctcctgccgagacctgaaactctgccaccctgaatggaagagcggt
gactactgggttgatcctaaccttggtagcagtgctgatgccatcaaagtgttctgtaat
atggagaccggagagacctgtgtgaagcccagcactcccaaaatcccacgcaagaactgg
tggaccagtaagggcaaggggctgaagcacgtgtggtttggagagagcatgaatggtgga
ttccacttcagctatgctgatagcagccagactcctagtactaccagcatccagatgaac
ttcctgagactgctgtctactgaggccactcagaccatcacctaccactgcaagaacagc
gtggcttacatggaccaagccacaggaaacctgaagaaggccgttttgctgcagggctcc
aatgatgtggagatcagagcagagggcaacagccgctttacatatggcgtggttgaggat
ggctgcaagaagcacactggtcagtgggccaagactgtgattgagtacaaaactcagaag
acatccaggctgcccatcgtggacattgctccaatggacatcggaggagcagatcaggag
tttggagtggacattggtgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
