Pseudomonas phoenicis: AA0Z93_05065
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Entry
AA0Z93_05065 CDS
T11920
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pphz Pseudomonas phoenicis
Pathway
pphz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AA0Z93_05065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphz03019
]
AA0Z93_05065
Enzymes [BR:
pphz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AA0Z93_05065
Messenger RNA biogenesis [BR:
pphz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AA0Z93_05065
SSDB
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Paralog
GFIT
Other DBs
NCBI-ProteinID:
XNQ59225
LinkDB
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Position
1102856..1104724
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AA seq
622 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLSLVSTCIFGGVGMN
PQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR
LPSKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRIYRLPAGHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALAEFKANTV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTRQKIADGDWMGFDASKIEVEKPEVRERAQPNARGGRNGQNRGDGANAGSGGR
KDKGKDKGKTRQASADKPAEKAKSGEQRQGQQPRKPREQHKPRTQQSAQASKPADNGNRD
PEAFLDDDVDNFGNRADYVSPYQNAKNQGRNRRPGAAAGGQTQGQGRGQGAGQRNNGPRS
GADKGLRNNANAGGARRDGGGRNRRDDSPRQEPAVRNPREPQNQPVIIRKESKLERYPTP
EQLDDLPNRPRGERPALLTRNR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggcacttgtccgcgctatcgaggccgcgggc
tatacccagcccactcccgtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggtcgccgcccaaaccggtaccggcaagaccggtggcttcgccctaccgatcctg
gagcgcttgttcccggccggccaccccgacaaatcccagcgccacggcccgcgccaaccg
cgcgtgctggtgctcacgcccacccgcgagctggccgcccaggtgcacgacagcttcaag
ctgtacgcccgcgacctgagcctggtcagtacctgcatcttcggcggcgtcggcatgaac
ccccaggtgcaggccatggccaagggtgtcgacgtgctggtggcctgcccgggccgactg
ctggacctcgccggccaaggcagcgtggatttgtcccacgtggaaatcctggtgctcgac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtcaagaaggtcctcgcgcgc
ctgccgtccaagcgccagaacctgctgttctcggcgaccttctccaaagacatcacggat
ctggccgacaagctgctgcacaaccccgagcgcatcgaggtcacgccgcccaacaccacc
gtcgagcgcatcgaacagcgtatctatcgcctgccggccggccacaagcgcgccctgctg
gcgcacttgatcaccctcggcgcctgggagcaggtactggtcttcacccgtaccaagcac
ggtgccaaccgcctggccgagtacctggaaaagcacggcctgaccgctgccgcgatccac
ggcaacaagagccagaacgcacgtaccaaggccctggccgaattcaaggccaacaccgta
cgcgtgctggtcgccaccgacatcgccgcccgtggtctggacatcgaccagctgccccat
gtggtcaacttcgagctgcccaatgtcgaagaagactacgtgcaccgtatcggccgtacc
ggccgtgccgggcgctcgggcgaagccatctcgctggtcgcgcccgacgaagagaagctg
ctcaagagcatcgagcgcgtcacgcggcagaagattgccgacggcgactggatgggcttc
gacgccagcaagatcgaagtcgaaaaaccggaagtgcgcgaacgcgcccagcccaatgcg
cgcggtggccgcaacggccagaaccgtggcgacggtgccaacgccggcagcggtgggcgc
aaggacaagggcaaagacaaaggcaagacgcgccaagccagtgccgacaagcctgcggaa
aaggccaagtccggcgagcagcgccaaggccagcagccgcgcaaaccgcgcgagcagcac
aagccgcgtacgcagcaatcggcacaggccagcaagccggccgacaacggcaaccgtgac
ccggaagccttcctcgacgacgacgtggacaacttcggcaaccgtgccgactatgtcagc
ccttaccagaacgccaagaaccaaggccgcaaccgtcgtccgggtgcagctgcagggggt
cagacccagggccagggccgcggccaaggtgcaggtcagcgcaacaacggcccgcgctct
ggcgctgacaaaggcctgcgcaacaacgccaacgccggtggcgcccgccgcgacggcggt
ggccgtaaccgtcgcgacgacagccctcgtcaagagcctgccgtgcgcaacccgcgcgag
ccacagaaccagccggtgatcatccgcaaggaatccaagctggagcgctaccccacgccc
gagcagctcgacgacctgccgaaccgtccacgcggcgaacgcccggcgttgctgacgcgc
aaccgctga
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