Pseudomonas phoenicis: AA0Z93_06850
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Entry
AA0Z93_06850 CDS
T11920
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pphz Pseudomonas phoenicis
Pathway
pphz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AA0Z93_06850 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphz03021
]
AA0Z93_06850 (rho)
03019 Messenger RNA biogenesis [BR:
pphz03019
]
AA0Z93_06850 (rho)
Transcription machinery [BR:
pphz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AA0Z93_06850 (rho)
Messenger RNA biogenesis [BR:
pphz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AA0Z93_06850 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
XNQ59557
LinkDB
All DBs
Position
complement(1513749..1515008)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLIDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgacagaactcaagcaaaagccgattaccgatctgctggaaatggccgagcag
atgggcatcgaaaacatggcccgttcgcgcaagcaggacgtgatcttctccctgctgaaa
aaacacgcgaaaagcggcgaagagatctcgggtgacggcgtgctggagattctccaggat
ggattcggtttcctgcgttcggcagacgcttcgtacctggccggccccgacgacatctat
gtctcgccgagccagatccgccgcttcaacttgcgcaccggtgacaccatcgttggcaag
attcgcccgccgaaggaaggtgagcgttacttcgcgttgctgaaggtcgacaccatcaac
ttcgaccgcccggaaaacgccaagaacaagattctgttcgagaacctgacccctctgttc
ccgaacaagcgcctgaagatggaagccggcaacggttccaccgaagacctgaccggccgc
gtgatcgacctctgcgcgcccatcggcaaaggccagcgcggcctgatcgtcgcaccgccc
aaggccggtaagaccatcatgctgcagaacatcgcggccaacatcacccgcaacaatccc
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgtggcgaagtggtcgcctcgaccttcgacgagccgccgacccgccacgtg
caggtcgccgaaatggtcatcgagaaggccaagcgtttggtcgagcacaagaaggacgtg
gtcatcctgctcgactccatcacccgtttggcgcgagcctacaacaccgtgatcccgagc
tccggcaaggtcctcaccggtggtgtcgacgcccatgccctggagaagcccaagcgtttc
ttcggcgccgcgcgcaacatcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gtcgagaccggctcgaagatggatgaagtgatctacgaagagttcaagggtaccggcaac
atggagctgcccctggaccgtcgcatcgccgagaagcgcgtgttcccggccatcaacatc
aaccgctccggtacccgccgcgaagagctgctgaccgccgacgacgagctgcagcgcatg
tggattctgcgcaagctgctgcacccgatggacgaaatcgccgccatcgagttcttgatc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtcgatgaagcgcaagtga
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