Entry |
|
Name |
|
KO |
|
Organism |
ppi Pseudomonas putida ND6
|
Pathway |
ppi00280 | Valine, leucine and isoleucine degradation |
ppi00907 | Pinene, camphor and geraniol degradation |
ppi01110 | Biosynthesis of secondary metabolites |
ppi01120 | Microbial metabolism in diverse environments |
|
Module |
ppi_M00957 | Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA |
|
Brite |
KEGG Orthology (KO) [BR:ppi00001]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
YSA_01503
00650 Butanoate metabolism
YSA_01503
09103 Lipid metabolism
00071 Fatty acid degradation
YSA_01503
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
YSA_01503
00310 Lysine degradation
YSA_01503
00380 Tryptophan metabolism
YSA_01503
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
YSA_01503
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
YSA_01503
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
YSA_01503
00930 Caprolactam degradation
YSA_01503
Enzymes [BR:ppi01000]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
YSA_01503
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
YSA_01503
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
YSA_01503
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
YSA_01503
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(784399..786546)
|
AA seq |
715 aa
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIQADASVKGVIVSS
GKDVFIVGADITEFVDNFKLPEAELVAGNLEANRIFNAFEDLEVPTVAAINGIALGGGLE
MCLAADYRVMSTSARIGLPEVKLGIYPGFGGTVRLPRLIGSDNAIEWIAAGKENRAEDAL
KVGAVDAVVAPELLLAGALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKSIQKAANFGRDKALEVEAAGFAKLAKTSVAESLIGLFLNDQEL
KRKAKAHDEIAHDVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIREEAIQLGLNEASKL
LGNRVEKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVEGQVK
DDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDVAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALYEANRLGQKNGKGFYAYETDKRGKP
KKVFDATVLDVLKPIVFEQREVTDEDIINWMMVPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGPLYHPTAKLREMAKNGQRFFN |
NT seq |
2148 nt +upstreamnt +downstreamnt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgagctc
aagttcgacctcaagggtgagtccgtcaacaagttcaaccgccttaccctgaacgagctg
cgccaggccgtcgatgccatccaggccgatgcctcggtcaaaggcgtgatcgtcagcagt
ggcaaggacgtgttcatcgtcggcgccgacatcaccgagttcgtcgacaacttcaagctg
cctgaggccgaactggtcgccggcaacctggaagccaatcgtatcttcaacgccttcgaa
gacctcgaagtgccgaccgttgccgccatcaacggcatcgcgctgggcggcggcctggaa
atgtgcctggcggccgactaccgggtcatgtccaccagcgccaggatcggcctgccggaa
gtcaagctgggtatctacccgggctttggcggtaccgtgcgcctgccgcgcctgatcggc
tcggacaacgccatcgagtggatcgccgccggcaaggaaaaccgtgccgaagacgccctg
aaagtgggggccgtcgacgcggtggtcgcccctgagctgctgctggccggtgccctcgac
ctgatcaagcgtgccatcagtggcgagctggactacaaggccaagcgccagccgaagctg
gaaaagctcaagctcaatgccatcgagcagatgatggccttcgagacggccaagggcttc
gtcgctggccaggccggcccgaactacccggccccggtcgaagcgatcaagagcatccag
aaagccgccaacttcggtcgcgacaaggccctggaagttgaagccgcaggctttgccaag
ctggccaagacctcggtcgccgagagcctgatcggcttgttcctcaacgatcaggaactc
aagcgcaaggccaaggcgcatgacgagatcgcccacgacgtgaagcaggccgccgtgctc
ggcgccggcatcatgggcggcggtatcgcctaccagtcggcggtcaaaggtacgccgatc
ctgatgaaagacatccgcgaagaagccattcagctgggtctgaacgaggcctccaagttg
cttggcaaccgcgtcgagaagggccgcctgaccccagccaagatggccgaggccctcaac
gccattcgaccgaccctgtcctatggcgattttgccaatgtcgacatcgtcgtcgaggca
gtggtcgagaacccgaaggtcaagcaagcggtactggcagaagtggaaggccaggtgaag
gacgatgcgatcctcgcttccaacacctctaccatctctatcaacctgctggccaaggcg
ctcaagcgcccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtgatccgtggtgagaagtccagtgacgtggcggtcgccaccaccgtggcc
tacgccaagaaaatgggcaagaacccgatcgtggtcaacgactgcccgggctttttggtc
aaccgcgtgctgttcccgtactttggcggttttgccaagctggtcagcgccggtgtcgac
ttcgtgcgcatcgacaaggtcatggagaagttcggctggccgatgggcccagcctacttg
atggacgtggtcggcatcgacaccggccaccacggccgtgacgtcatggccgaaggcttc
ccggatcgcatgaaggacgagcgccgctcggcagtcgacgcgttgtacgaggccaaccgc
ctgggccagaagaacggtaagggcttctacgcctacgaaaccgacaagcgcggcaagccg
aagaaggttttcgatgccaccgtgctcgacgtgctcaaaccgatcgtgttcgagcagcgc
gaagtcactgacgaagacatcatcaactggatgatggtcccgctgtgcctggagaccgtg
cgttgcctggaagacggcatcgtcgaaaccgctgccgaagccgacatgggcctggtctac
ggcattggtttccctcccttccgcggtggtgcgctgcgttacatcgactcgatcggtgtg
gccgaattcgtcgccctggccgatcagtatgccgacctggggccgctgtaccacccgacc
gccaagctgcgtgaaatggccaagaacggccagcgcttcttcaactga |