Pseudomonas putida ND6: YSA_02557
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Entry
YSA_02557 CDS
T02170
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03030
DNA replication
ppi03430
Mismatch repair
ppi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YSA_02557
03430 Mismatch repair
YSA_02557
03440 Homologous recombination
YSA_02557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppi03032
]
YSA_02557
03400 DNA repair and recombination proteins [BR:
ppi03400
]
YSA_02557
Enzymes [BR:
ppi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YSA_02557
DNA replication proteins [BR:
ppi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YSA_02557
DNA repair and recombination proteins [BR:
ppi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YSA_02557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AFK68155
UniProt:
I3URN4
LinkDB
All DBs
Position
complement(1378751..1382275)
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAGADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVILQREWI
APASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEY
VHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLK
SAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFHDE
IKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRHRGACPITLEYTGSDAKA
MLQFGEQWAIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccttcgttcacctgcgcgtccactccgaattctcgctggtcgacggcctg
gtgcggatcaagccgctggccaaggcgctgaccgggatgaacatgccggcggtcgcgatc
accgatcagagcaacatgtgctcgctggtgaagttctacaagacggccatgggcgccggc
atcaagccgatctgcggtgccgacctgtggctggccggtgccgacccggaagccccgctg
tcgcgcatatgcttcctggccatgaaccccaagggctatcgcaacctcaccgaactgatc
tcgcgcggctggaccgatggccagcgcaatggcctggtcatcctccagcgtgaatggatc
gccccggccagcgagggcctgattgccttgtccgcgggcaaggaaggcgacattggcatg
gcgctgctggcgggtcggcaagacgaagccgaagcgcttcttcaggactggatgggcatg
ttccccgagcgcttctacgttgaagtgcagcgcaccaatcgcgcacgcgacgaagaatac
gtgcacgcggcggtggcattggccgacaagcttggcgccccgctggtggctaccaacgac
gtacgtttcatcaaacaggcggatttcgacgcccacgaaacccgcgtctgtatcggtgag
ggctggaccctcgatgacccgcgccggccgcgttgctacagcgaccagcagtacctgaag
tcggcggaggaaatggccgagctcttcagcgacctgcccgacgccatcgccaacaccgtc
gaaattgccaagcgctgcaacatccaggtacagctgggcaagtacttcctgcctgacttc
cccacgcccaatggcatgggcatcgatgactacctgcggcatgtgtcccacgaaggcctg
gaagagcgcctggccgtgttgtggccgaaagagacgacgcccaattatgaagaaaagcgt
caggtttacctggaccgcctgaagttcgaactggacatcatcatccagatgggcttcccc
ggttacttcctgattgttatggacttcatcaagtgggccaagaacaacgacgtaccggtg
ggcccgggtcgtggttcgggtgccggctcgctggtggcctatgtcctgaagatcaccgat
ctcgacccgctggcctacgacctgctgttcgagcgcttcctcaaccctgaacgtgtttcc
atgcccgacttcgacgtcgacttctgcatggacggccgtgaccgggtgatcgactacgtg
gccgaggcctacgggcgtaatgcggtgagccagatcatcaccttcggtaccatggccgcc
aaggcggtggtgcgtgacgtggcgcgggtgcaaggcaaatcctatggcctggccgaccgc
ctgtcgaagatgatccccttcgaagtgggcatgaccctggagaaggcctacgagcaggaa
gaaatcctgcgtgacttcctcaagggcgacgaagacgcccgtgaaatctgggacatggcc
ctgaagctggagggtgtgacccggggtaccggcaagcacgccggtggtgtggttatcgca
ccgaccaagctcaccgacttttcgccgatcgcctgtgatgaagagggtggtggcctggta
acccagttcgacaaggatgacgtcgaggccgccggcctggtgaagttcgacttcctcggc
ctgcgtaccttgaccatcatcaagtgggcgatggagatcatcaaccgcgagcaggccaag
aagaacctgcccgacctcaacatcgacttcattccgctggacgaccgcaagacctacgag
ctgctgcagaaggccgaaaccacggcggtgttccagcttgaatcgcgcggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaagacctgatcgcactggttgcgttgttc
cgcccgggcccgctgcaatcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgagctggcctacccgcactccgactaccagtacgaaggcctcaagccggtactggcg
ccaacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatggca
ggttataccttgggtggcgccgacatgctgcgccgggccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggtggtttcatcgaaggttgcgtagccaacaatatcgatgcg
gacctcgccggtaacatcttcgacctggtagagaagttcgcgggctacggcttcaacaaa
tcccactccgccgcctatggcctggtgtcgtaccagaccgcctggctgaaaacccactac
ccggcgccattcatggccgcggtcctgtcggcggatatgcacaacaccgacaaggtggtg
gtgctggtggaggaggtgcgcagcatgaagctgcgcctcgacgcgccggatgtgaacttc
tcggacttcaagttcaccgtcaacaacgatggccgtatcgtctacggccttggtgccatc
aagggtgtcggcgaaggcccggtggaggcgattgtcgaggcccgtgcccaaggcggtccc
ttcaaggacctgttcgatttctgtgaacgcatcgacctcaaacgggtcaacaagcgtacc
cttgatgcgctggtgcgcagtggcgcgctggaccgccttggcccgcacttccatgacgag
atcaaggcctaccacgccaacatcgacatcaaccgggcaaccttgctgtcggcgctgggc
gaggccatcaaggcagccgagcaggccgcacacaccgctgacagtggtcatgtcgacctg
ttcggcagcatgttcgacgcggcagatgtcgatgtgtatgccaaccaccgcaaggtgcgc
gagctcaccctcaaggagcgtctcaagggggagaaggacacccttggcctgtacctcacc
ggccacccgatcgacgagtacgagaccgagatccgtcgcttcgcccgccagcgcatcgtc
gacctcaagccgtcgcgcgaaacccagaccatcgcgggcatgatcattgcgctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcgtcaccctggatgaccgttccgggcgg
atcgaggcatcgctgtttgccgatgccttcatggcggcacagtccttgctgcagaccgat
gcgatggtggtggtggaaggcgaggtcagcaatgacgacttctccgggggcttgcgcctg
cgggtgaagcaggtgatgaccatggaagacgcacgcaccaagctggccgagagcctgcgc
ctgaaggtggcgcacgacgcactgaagggcgaccggctgaagtggctgggtgagctgatc
acccgccatcgcggtgcttgcccgatcacgctggagtacaccggcagcgacgccaaggcc
atgctgcagtttggcgagcagtgggcgatcgacccggccgatgggctgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
DBGET
integrated database retrieval system
