Pseudomonas putida ND6: YSA_03075
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Entry
YSA_03075 CDS
T02170
Name
(GenBank) RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSA_03075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppi03019
]
YSA_03075
Enzymes [BR:
ppi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YSA_03075
Messenger RNA biogenesis [BR:
ppi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YSA_03075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
AFK68436
UniProt:
I3USG5
LinkDB
All DBs
Position
1662637..1663833
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AA seq
398 aa
AA seq
DB search
MVEPQEGKTRFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKT
AAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVG
GMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQV
RQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVA
GSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTL
ESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISF
AGEDDSYQLPAIEALLGRKIKCEMPPDELLKPVPRKHH
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtggtcgagccacaggaaggcaaaacccgcttccacgacttcaagctgtccaacgagctg
atgcacgccatccacgacctgggcttcccgtactgcacgccaatccaggcgcaggtcctg
ggttacaccctgcgtggccaggacgccatcggccgggcccagacgggcactggcaagacg
gccgccttcctgatctcgatcatttcccagttgcagcagacgccaccgcctaaagagcgc
tacatgggcgagccgcgcgcgctgatcatcgcccccacccgtgagctggtggtgcagatc
gccaaggacgccgctgccctgaccaagtacaccggcctgaacgtgatgagcttcgtcggt
ggcatggacttcgacaagcagctcaaagccctggaagctcgccactgcgatatcctggtg
gccaccccgggccgcctgctggacttcaaccagcgtggcgaagtgcacctggacatggtc
gaggtgatggtgcttgacgaagccgaccgcatgctcgacatgggcttcatcccccaggtc
cgccaaatcattcgtcagacaccgccgaaaagcgagcgccagaccctgctgttctccgcc
accttcaccgacgatgtgatgaacctggccaagcagtggaccaccaacccggccatcgtc
gagatcgagccggagaacgtggccagcgaaacggtggagcagcacgtgtatgcggtggcc
ggcagcgacaagtacaaactgctgtataacctggtaacccagaacaagtgggaacgggtg
atggtgttcgccaaccgcaaggacgaagtgcggcgcatcgaggaaaagctggtacgcgac
ggtatcaatgccgcccagctgtcgggcgacgtgccgcagcacaagcgcatccgaaccctg
gagagcttccgcgaagggcgcatcaccgtgctggtggccaccgacgtggccgggcgcggg
atccatatcgatggcatcagccacgtgatcaacttcaccctgccggaagaccctgacgac
tacgtgcaccgcattggccgtaccggccgtgccggcaccagtggtgtgtcgatcagcttt
gccggtgaagatgactcgtatcagctgccagcgatcgaagcgctgctggggcgcaagatc
aagtgcgagatgccgccggatgaactgctcaagccggtgccgcgcaagcatcactga
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