Pseudomonas putida ND6: YSA_03285
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Entry
YSA_03285 CDS
T02170
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
YSA_03285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppi03400
]
YSA_03285
Enzymes [BR:
ppi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
YSA_03285
DNA repair and recombination proteins [BR:
ppi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YSA_03285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AFK68556
UniProt:
I3UST5
LinkDB
All DBs
Position
complement(1779358..1782807)
Genome browser
AA seq
1149 aa
AA seq
DB search
MIVHGNRLDDLRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAEDPLEDDQGGCG
IAAAIDVQLPGSFMWQLYRSVLGRSEIPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRR
FLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWASGEHVINTARGERKVLPPGNRWQ
AELWRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQALEA
LAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQTLHQHAHP
LLAAWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNELQDDILELRPLA
ESRERWPPVDTTKDRSIRFHVAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPDIDT
YAPHIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLD
VPAVRARFGIRENDLPTLHRWIEGAGIRWGLDAAQRASLGLPAGLEQNSWRFGLRRMLLG
YAVGVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATVSQWGERLHALL
HVFFLAEDEGDEFLLMQLQDLRDSWLEVCETVGLHDPLPLTVVREAWLSGLDQGKLSQRF
LAGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRPGDRSRREDDRY
LLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDYIAAGWHLADAQQGQPAKPGE
QLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGEADEQSEPGLPPYQDAEALS
LHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASESLLGAALAEPD
NAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDLLQRHQQLLQRWPQLVEGALPV
HFEHGQHRLEGWLGRVFQAEDQSLLSITTVPNTISAGRNNLKWHRLIAPWATHLAACAAG
YPYNSALVASDLTLLLAPLPQALAAQLLGDLLVARQAAMNAPLPVAAKTAFAWLAQDDAD
KAMAAAARAYEGDERTSFGERSESIALARQFRDFAALTADETFEGWCETLYRPLFTAPWQ
TLGNPEKGA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtccacggcaaccgcctcgacgacctgcgtagcctggtagtgagctggatgcgt
cgctacccgctggcgcctctggaaaacgaaattgccctggtgcaaagcaatggcatcgcc
caatggctgaagctggccctggctgaagatccgctggaagatgaccaaggcggctgcggc
atcgccgctgccatcgatgtgcaactgcccggtagctttatgtggcagctctaccgcagc
gtgcttggccgtagcgaaattcccgaagtgtctcttctcgacaaggcaccactgacctgg
cggctgatgcgtctgttgccagcgctcatcgagcgtccgcatttcgagccactgcggcgc
ttcctcaccgacgacagtgacttgcgcaagcgctaccagctagccgagcgcctggccgac
ctgttcgaccagtaccaggtctaccgtgccgattggctcaaggactgggccagtggcgag
cacgtcatcaacacggcccgcggcgagcgcaaagtactgccgccaggcaaccgctggcaa
gccgagttgtggcgagcattactggaggatgttggcgagcaaggcatggcgcagagccgc
gccggagtacaccaacgtttcatcgagcgcatcaacagcctggagcaggcgcctgcaggg
ctgccaccgagggtgatcgtgttcggtatctcttcgctgccggcccaggccctggaagcg
ctggcaggcctgtcgcgtttcagtcaggtattgctgtgcgtacacaacccatgccgccac
cactgggccgatatcgtcgccgacaaggacctgttgcgccaccagtacaaacgccagcaa
cgcaagcaaggcatgcccctgcaattggacgaccagacgctgcaccagcatgcccaccca
ttgctggcagcctggggtaaacaaggccgcgactacatcaacctgctcgacagctatgat
gacccaggcagctaccagggcgtgttcagcgacggccgcatcgacctgttcagcgacggt
tcgcccaccacgctgctaaacgaactgcaggacgacatcctggagttgcgcccgctcgcc
gagagccgcgaacggtggccgccagtcgacaccacaaaagaccgctcgatccgcttccat
gttgcgcacagcccgcaacgtgaagtggagatcctccacgaccagctgttggcccgcttc
agcgccgacccgactttgcgcccgcgcgacgtaatcgtcatgctgccggacatcgacact
tacgcgccgcatatccgcgccgtcttcggccagttgcagcgcaacgacccgcgctacatc
ccgttcaccctgacagaccagggccagcgtggtcgcgagcctttgctgatcgcgcttgag
cacctgctcaaactgcctgacagccgcttcgcggtcagcgaagtgctcgacctgctggac
gtgccggcagtccgcgcccgcttcggcatccgcgaaaacgatctgcccacgctgcaccgc
tggatcgagggcgctggcatccgttggggccttgacgccgcgcagcgggcgagcctgggc
ttgcccgccgggctcgaacagaacagttggcgtttcggcttgcgccgcatgctgttgggt
tatgccgtgggggtgggtgaggcctgtgatggtattgagccctacgatgaaatcggtggc
ctggacgcggcactgatcggcccgctggtcgcgttgctggatgcgctcgaagtcgcctgc
caggccttgtccgagcctgccaccgtcagccagtggggcgagcgactgcatgccttgctg
cacgtgttcttcctcgccgaggacgagggtgatgagttcctgttgatgcagttgcaggat
ttgcgtgatagctggcttgaggtgtgcgagaccgtcggcctgcacgacccgctaccgctt
accgtggtgcgtgaagcctggttgtcgggccttgatcagggcaagctgtcacaacgtttc
ctcgccggctcggtcaacttctgcacactcatgcccatgcgcgcgatcccgttcagggtg
gtctgcctgctgggcatgaacgatggcgattatccgcgtgcgcagccaccgctggacttc
gacctgatggccagcgactatcgccccggcgaccgctcacgccgcgaagacgaccgttac
ctgttgcttgaagcgctactgtccgcacgtgaccaactgtatgtcagctgggtcgggcgc
agtattcgcgacaatagcgaacgcccggcctcggtgctgatcggccagttgcgcgattac
atcgctgcgggctggcatttggccgacgcgcagcagggccagcccgcgaaaccgggcgag
caactgttgcacgcactgacccaggagcacccgctgcagccgttcagccctcggtacttc
cagaagggcagcccattgttcagctatgcccatgaatggcaggtgctgcaccagcaaggt
gaggcagacgagcagagcgagccgggcctgccgccttatcaggacgctgaagccctgagt
ttgcaccagctgaatgacttcttgcgccacccggtacggcacttcttcagccagcgcttg
aaggtgtactttgaggcgctggaagcgccgaccccggacgaggaacccttcgtcctcgat
accctgcaacgctacggcgccagtgaaagcctgcttggcgccgccttggccgaaccggac
aacgccgaacaggccttgcgcgcccaggcccgacgcctgcaggcctgcggtttgctgccg
ctagcaggtttcggcgaactgctgcaaaacgagttgatcgaaccgctgccggacctgctg
caacgtcaccagcaattgctgcaacgctggccacagctggtcgagggcgctttgccggtg
catttcgagcacggtcagcaccgtctggagggctggctgggccgggtgttccaggcggaa
gatcagagccttctcagcatcaccacagtacccaacactatcagtgccgggcgcaacaac
ctgaagtggcaccgccttatcgcgccctgggctacgcacctggcggcctgtgcagcgggc
tacccctataacagtgcattggtagccagtgacctgaccctgttgcttgcaccgctgccg
caagcgctggccgcgcaactgctgggcgacctactggtggcccgtcaggcggcaatgaat
gcgccgttgccagtcgcggccaagaccgcgttcgcctggttggcccaggacgatgccgat
aaagccatggccgcagcagctcgcgcctacgaaggcgacgaacgcaccagttttggcgaa
cggagtgaaagcattgccttggcccgccagttccgggactttgcagcactcactgctgac
gaaacgtttgaaggctggtgcgaaaccttgtatcgcccgttgttcaccgccccttggcag
accttgggcaacccggagaaaggcgcatga
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