Pseudomonas putida ND6: YSA_03637
Help
Entry
YSA_03637 CDS
T02170
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSA_03637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppi03019
]
YSA_03637
Enzymes [BR:
ppi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YSA_03637
Messenger RNA biogenesis [BR:
ppi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YSA_03637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFK68734
UniProt:
I3UTB3
LinkDB
All DBs
Position
complement(1952655..1953986)
Genome browser
AA seq
443 aa
AA seq
DB search
MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR
LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR
QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKADLFCHLLR
KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE
VLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKKPKENSAKRGLGRWMDSSEAGS
AEPAVKAVRKVPSFNGGPRKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgccaaactcggcctgatcgaaccgctgctgcgcacgctgcagcaactggac
tacaccaccccgaccccggtgcaggccaaagccatccccgccgtgctggccggccgcgac
ctgatggccgcagcccagaccggtaccggcaagaccgcaggctttgccctgcctgtgctg
cagcgcctggcgctggagggcgagaaggtggccagcaactcgatccgcgccttggtgctg
gtgcccactcgcgagctggccgagcaggtgcacaacaacgtgcgcgaatacgccgagaac
ctgccgctgagtacttacgcggtgtatggcggggtcagtatcaacccacagatgatgcgc
ctgcgccggggtgtcgacctgctggtggctacccctggccgcttgctcgacctgttccgg
cagaacgccgtgaagttcaaccaggtgcagaccctggtgctggatgaagccgaccgcatg
ctggacctgggctttgccgaagagctgcagtcggtgtatgcggcactgccgcgcaagcgc
cagacgctgctgttttccgccaccttctccgatcagattcgcatgctggcggggctggcg
ctgaatgacccgctcagtatcgaagtgagcccgcgcaacgccacggccaccagcgtcaag
cagtggctggtgcctgtggacaagaagcgcaaggccgacctgttctgccacctgctgcgc
aagcagcgctggaagcaggtgctggtgttcgccaagacccgcaatggcgtcgatcagctg
gtggagcgcttgctggccgaaggcgtgaatgccgacggcatccacggtgatcgcccacag
gcgacccgccagcgtgcgctggacagcttcaaggcccgtgaggtgcaagtgctggtggcg
accgatgtggcggcccgcggcctggatatcgatgacttgccgctggtcgtcaaccttgac
ctgccgatcgttgccgaagactacgtgcaccgcatcgggcgtaccgggcgggcgggcaac
aagggcgaggcgatttcgctggtgtgtgcggatgaagtgcaactgctggcggctatcgag
gtgctgacccggcagaccctgccgcgtcatgaagagccggatttcatccccgagcaccgg
gtgccgatgaccgatgccagtgggcaggttatcaagaaaccgaagaagcccaagaagccg
aaagaaaacagcgccaagcgcgggctggggcgctggatggacagcagtgaagctggcagt
gcggaaccggcggtgaaggctgtacgcaaggtgccgagcttcaatggtgggccgcgcaag
cgcaagccttga
DBGET
integrated database retrieval system
