Pseudomonas putida ND6: YSA_03875
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Entry
YSA_03875 CDS
T02170
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSA_03875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppi03019
]
YSA_03875
03016 Transfer RNA biogenesis [BR:
ppi03016
]
YSA_03875
Enzymes [BR:
ppi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
YSA_03875
Messenger RNA biogenesis [BR:
ppi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YSA_03875
Transfer RNA biogenesis [BR:
ppi03016
]
Prokaryotic type
tRNA degradation factors
YSA_03875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
CSD
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
AFK68865
UniProt:
I3UTP4
LinkDB
All DBs
Position
complement(2070771..2073545)
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AA seq
924 aa
AA seq
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MVRTIRTLPKAVKPPIEKKFKKFNLLIPQAYFCCLCTAAGAVQGRHFRFQYAYARIHIYI
PQGEPLLMADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAKEFGLYEE
DQIEALRRRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLF
LSPSQMRLVFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDN
PKIQQEVLVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALR
SYDIPHVWPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLG
KLRLFSGGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSL
NPHVDRLAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREE
YKEVVPDLKNLYNLYKVLVEARHTRGAIDFETQETRIIFGDERKIAEIRPTVRNDAHKLI
EECMLAANVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDY
QALLASIAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVH
RAIRSIIRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVN
WLKCEFMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLA
GERTGRSFRLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAEQQPA
TEAKATPKPRSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMTDARSSAGSKSEKGGKP
SGKPTKHRKGPPKSGAPRKNKSNS
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
gtggtgcgcactatacggacgctccccaaggctgtaaagcccccaatcgaaaaaaaattc
aaaaaattcaacttgttgattccacaagcctatttctgctgtttatgcactgcagcgggg
gctgtccaaggcagacatttccggtttcaatacgcctatgccagaattcatatctatata
ccccaaggtgaaccccttctgatggccgattggcaatccctcgatcccgaggccgctcgc
gaagcggaaaaatacgacaaccccattcccagccgtgagctgatcctgcagcgtctcgcc
gaccgaggcgaacctgctgcccgcgaggagctggcaaaagagttcggtctgtatgaagaa
gaccagatcgaagccctgcgccgccgcctgcgtgccatggagcgcgatggccagcttatc
tatacccggcgcggcacttatgccccggtagacaagctggacctgatctgcggtcgcgtc
tccggccaccgcgacggcttcggcttccttattcccgatgacggcagcgaagacctgttc
ctcagcccgtcgcagatgcgactggtgttcgacggcgaccgtggcctggcccgcgtctcc
ggtgtcgaccgccgtggccgccgtgaaggcgtgctggtcgaagtcatctcccgtgcccac
gaaagcgtggtcggccgctatttcgaagaaggcggcatcggttacgtaaccccggacaac
ccgaagatccagcaggaagtgctggtgactgccgggcgtaacggcggtgccaagatcggc
cagttcgtcgagatcaagatcacccactggccaacgccgcgcttccagccgcaaggcgat
gtggtcgaggtcatcggcaactacatggcaccaggcatggaaatcgacgttgccctgcgc
agctacgacattccgcacgtctggcccaacgatgtggtcaaggaggcacgcaagttccgc
tccgaagtcgaggagaaggacaaagagaagcgtgtcgacctgcgccatctgccgttcgtc
accatcgacggtgaagacgcccgcgacttcgacgatgccgtttattgcgaaccgctgggc
aagctgcgtctgttctccggtggctggcgcctgtacgtggccatcgctgacgtgtccagc
tacgtgcgtctgggctctgccctggatgtcgaagcccagcagcgcggcaactcggtttac
ttccccgagcgcgtggtgccgatgctccccgaagagctgtccaacggcctgtgctcgctg
aacccgcatgtcgaccggttggccatggtctgtgaaatgaccatgaacaaagccggccag
atggtcgactaccagttctacgaaggcgtaatccactcccatgcccgcctgacctacaac
aaggtcagcagcatgctcgagcactcgcgtacccgtgagggcaaggcgctgcgcgaggaa
tacaaggaagtcgtgcccgacctgaagaacctgtacaacctgtacaaggtgctggtggag
gcgcgtcacacacgtggcgccatcgacttcgaaacccaggaaacccgcatcatcttcggc
gacgagcgcaagatcgccgaaattcgcccgaccgtgcgcaacgatgctcacaagctgatc
gaggaatgcatgctggcggccaacgtggccacggccgagttcctgcagaagcacggcgta
ccggccctgtaccgcgtgcacgatggcccgccgccggagcgcctggaaaaactgcgcgcc
ttcctcggcgagctgggtctgagcctgcacaagggcaaggacccgtcaccgaaggattac
caggccctgctggcgagcatcgccggtcgcccggacttccatctgatccagacggtgatg
ctgcgctcgctgagccaggccgtgtacagcaccgagaacaacggccacttcggcctgaac
tacgaggcgtacacccacttcacctcgccgatccgtcgttacccggacctgctggtgcat
cgcgccatccgcagcatcatccgctccaaggtcgataccccgcacgtcaagcgtgccggc
gccatgagcatccccaaggcgcgtatctacccgtacgacgaaaacaccctggagcaactt
ggcgagcagtgctcgatgaccgagcgccgggccgacgaggccacccgtgacgtggtcaac
tggctcaagtgcgagttcatgaaagatcgcgtgggcgagaccttcccgggtgtgatcacg
gcggtgaccggtttcggcctgttcgtcgagctgaccgatatctatgtagagggcctggtg
cacgtcagtgcgttgccaggtgactactaccacttcgacccggtacaccatcgcctggct
ggcgagcgcaccggtcgcagcttccgcttgggcgacaccatcgaagtcaaggtcatgcgt
gttgatctggatgagcgcaagatcgacttcgaagtgtcggaaaagaccctcgccgcaccg
atcggccgcaagcagcgtggcgccgcgccggttgccgaaaaagccgagcagcagccggca
accgaagcgaaagccacgcccaagccgcgcagccgcaaaagcgaagcgtccgaagcgtac
ttccccaaggatgctgtgcagcgaaacgctgaagtgcgtaaaagccgcgagatgaaaaaa
gcgctgatgaccgacgcgcgcagcagtgctggcagcaaatcggagaaaggtggcaagccg
tccggcaaaccgaccaagcaccgtaaaggcccgccgaagtccggcgcaccacgcaaaaac
aagagcaattcatga
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