KEGG   Pseudomonas putida ND6: YSA_03900
Entry
YSA_03900         CDS       T02170                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ppi  Pseudomonas putida ND6
Pathway
ppi02024  Quorum sensing
ppi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YSA_03900
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    YSA_03900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppi03019]
    YSA_03900
   03036 Chromosome and associated proteins [BR:ppi03036]
    YSA_03900
Messenger RNA biogenesis [BR:ppi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     YSA_03900
Chromosome and associated proteins [BR:ppi03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    YSA_03900
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AFK68875
UniProt: I3UTQ4
LinkDB
Position
complement(2086011..2086271)
AA seq 86 aa
MSKGHSLQDPYLNTLRKEKVPVSIYLVNGIKLQGSIESFDQFVVLLKNTVSQMVYKHAIS
TVVPARPVRLPSPTDSEHGDSEPGNA
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttacttgaataccttgagaaaagaaaaggtc
ccggtatccatttacctggtcaacggtatcaaactgcagggctcgatcgagtcgttcgac
cagttcgtggtattgctgaagaacaccgtcagccagatggtctacaagcacgccatctcg
accgtagttccggcccgtccggtccgcctgccaagcccgaccgacagcgagcacggcgac
agcgagccaggcaacgcctga

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