Pseudomonas putida ND6: YSA_04002
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Entry
YSA_04002 CDS
T02170
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
ppi
Pseudomonas putida ND6
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppi03009
]
YSA_04002
Enzymes [BR:
ppi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
YSA_04002
Ribosome biogenesis [BR:
ppi03009
]
Prokaryotic type
rRNA helicases
YSA_04002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AFK68931
UniProt:
I3UTW0
LinkDB
All DBs
Position
2153682..2155067
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AA seq
461 aa
AA seq
DB search
MTTESTAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAF
GIGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIA
SLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSR
RQTLLFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLG
HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA
TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE
ALQKSSLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQV
GKIAIFDFQAFVAVERALAKQAMQRLNSGKIKGRALKVRIL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgaatccaccgcctttgccaccttgccgctgtccactgccatgctggccaac
ctggaagccctcggctatgcctcgatgacgccgatccaggcccagagcctgcctgtcatc
ctcaaaggccaggacctgatcgcccaggccaagaccggtagcggcaagactgccgccttc
ggcatcggcctgctcaacccgatcaacccgcgctacttcggctgccaggcgttggtgctc
tgtcctacccgcgaactcgccgaccaggtggccaaggagctgcgccgcctggcccgtgcc
gaggacaacatcaagatcctgaccctgtgcggcggcgtttcactgggcccacagatcgct
tcgctggagcacggtgcgcacatcatcgtcggcaccccagggcgcatccagcagcacctg
gacaaaggcaccctggtcctggacgggttgaacaccctggtgctggacgaagccgaccgc
atgctcgacatgggcttcttcgacgccatcgccagcatcatcggcaagaccccttcgcgc
cgccagaccctgctgttctcggccacctacccggccggcatcaagcaactggccgccgac
ttcatgcgcaacccgcagcaggtcaaggtcgaaagcctgcacaccgacaaccagatcgag
cagcgtttcatcgagattgacccgcagcaacgcctggaagccgtcacccgcgtgctcggc
cactaccgcccgcagtcgtgcgtagcgttctgcttcaccaagcagcaatgcgaggacgtg
gttgcccacctgaccgccaagggcatcgtcgcccaggccctgcacggcgacctggagcag
cgcgaccgtgaccaggtgctgaccatgttcgccaaccgcagcagctcggtgctggtggct
accgacgtggccgcgcgcggcctggacatcgatggcctggacatggtcatcaacgtggag
ctggcgcgtgatgcggaaatccacgtgcaccgcgtgggccgtaccggccgcgccggcgag
aaaggcgttgcggtcagcctggtggcaccggccgaaggccaccgcgcccaggccatcgaa
gcgctgcagaagagctcgctgcgctgggaccagctggacagcctgaaaaacaagggcggc
gagcccctgctgccggtgatgaccacactgtgcattgccgctggccgcaaggacaagctg
cgccctggcgacatcctgggggccctgaccggtgatgccggcatcccgggcaagcaagtg
ggcaagatcgccatcttcgacttccaggcgtttgtggccgtggagcgggcgttggccaag
caagccatgcagcgactgaacagcggcaagatcaagggtcgcgccctgaaagtccgcatt
ctctaa
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