Pseudomonas putida ND6: YSA_04061
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Entry
YSA_04061 CDS
T02170
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSA_04061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppi03019
]
YSA_04061
Enzymes [BR:
ppi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YSA_04061
Messenger RNA biogenesis [BR:
ppi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YSA_04061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
P-loop_SecA
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AFK68965
UniProt:
I3UTZ4
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All DBs
Position
2186464..2188065
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AA seq
533 aa
AA seq
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MHDSFKVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHV
EILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEV
TPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGL
TAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYV
HRIGRTGRAGRSGEAISLVAPDEEKLLKSIERVTKQRIADGDLMGFDASQVEAEKPETRE
RPQNNGRGGRNQQARGEGAKDSNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQQPRKP
RDKKPRPQQASNNGVPKPPADRDPEEFLDDEVDNFGNRADYVSPYQGKNQGRNRRPGGAG
QGQGQGNGQRSNAGGQGQARNGGQPRSGGGEKRPPRANNGGGARRDGGGGRGRPARDDAA
RQEPAVRNPRQPEKQPVIIRKESKLDRFPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
gtgcatgacagtttcaaagtctatgcccgtgacctgccactggtcagcgcctgcatcttc
ggcggcgttggcatgaacccgcagatccaggccattgccaaaggcgttgatgtgctggtc
gcctgcccaggccgcctgctcgacctggccggccaaggcaaggtcgacctggcccacgtg
gaaatcctggtacttgatgaagccgatcgcatgctcgacatgggcttcatccacgacgtc
aagaaggtgctcgcccgcctgccagccaagcggcagaacctgcttttctcggccaccttc
tccaaggacatcaccgacctcgccgacaagctcctgcacaacccggagcgtatcgaggtc
accccgccgaacaccaccgtcgagcgtatcgagcagcgggtgtaccggctgcctgccagc
cacaagcgtgccctgctggcgcacctgatcaccttgggcgcctgggaacaggtgttggtg
ttcacccgaaccaagcacggtgccaaccgcctggccgagtatctggaaaagcaaggcctg
accgccgccgcgatccacggcaacaagagccagaacgcccgcaccaaggctttggccgac
ttcaaggccaacagcgtgcgcgtactggtcgccaccgacatcgctgcccgcggcctggac
atcgaccagttgccccacgttgtcaacttcgagctgccgaatgtcgaggaagactacgtc
caccgcattggccgtaccggccgtgccggtcgttcgggcgaagctatttccctggtcgca
ccagatgaagaaaagctgctcaagagcatcgagcgggtgaccaagcagcgcatcgcggat
ggcgacctgatgggcttcgacgccagccaggtcgaagccgagaagcctgaaacacgcgag
cgcccgcaaaacaacggccgcggtggccgcaaccagcaagcccgcggcgaaggtgccaaa
gacagcaacggcggccgcaaggacaaaggcaaggacaaaggcaaagccaggcagcaagct
gcggccaagccggacgacaaggaaaagagcggcgacaagcagcagcagccgcgcaagccg
cgtgacaagaagccacgcccacagcaggccagcaataacggcgtgccgaaaccgccagca
gaccgcgacccggaagagttcctggacgacgaggtcgataacttcggtaaccgcgccgac
tatgtcagtccgtaccagggcaaaaaccagggccgcaaccgtcgcccaggtggtgctggc
caaggtcaggggcaaggcaatggtcaacgcagcaacgctggcggccaaggccaagcccgc
aatggcggccagccacgcagtggtggcggagaaaaacgcccgccccgcgccaacaacggt
ggcggtgcccgtcgtgatggcggcggtggccgtggtcgccctgcgcgtgacgatgctgcc
cggcaagagccggccgtgcgcaacccgcgtcagccggaaaaacagccagtgatcattcgc
aaggagtccaaactggaccgcttcccgacgcctgagcaactggatgacctgccaagccgc
ccacgcggtgagcgcccggcgctgctgacccgcaagggctga
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