Pseudomonas putida ND6: YSA_04382
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Entry
YSA_04382 CDS
T02170
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
YSA_04382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppi03400
]
YSA_04382
Enzymes [BR:
ppi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
YSA_04382
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
YSA_04382
DNA repair and recombination proteins [BR:
ppi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
YSA_04382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AFK69139
UniProt:
I3UUG8
LinkDB
All DBs
Position
complement(2372333..2373145)
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AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVVVRDRRLRWPIPEDLDVRLSGQRIVSVERRAKYL
LINAEVGTLISHLGMSGNLRLVELGLPAAKHEHVDIELESGLMLRYTDPRRFGAMLWSLD
PLNHELLLRLGPEPLTDLFDGERLFQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAGGISRARYLKLAIEIKRVLAAAIEQGGTTLRDFIGGDGQPGYFQQELFVYGR
GGQPCKVCGTELREVKLGQRASVYCPRCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccagaagtagaaaccacccggcgcggtattgcgccacacctggaaggc
cagcgcgtcagccgtgtggtggtacgcgaccggcgtctgcgctggccgattccggaagac
ctcgatgtgcgcctgtcagggcagcgcatcgtcagcgtggagcgacgtgccaagtacctg
ttgatcaatgccgaagtgggtacgctgatcagccacttgggcatgtcgggcaacctgcgg
ctggtcgagctgggcttgccggcggccaagcatgagcatgtcgacatcgagctggagtcc
gggctgatgctgcgctacaccgacccacgccgctttggtgccatgctgtggagcctggac
cctctgaaccatgagctactgctgcgcttggggcctgagccgctgaccgacctgttcgat
ggtgaacggctgttccagctgtcccgcgggcggtcgatggcggtcaagccgttcatcatg
gacaacgcggtggtggtaggggtgggcaacatctacgccaccgaggcgctgtttgccgcc
ggtatcgacccacgccgggaggcgggcgggatttcccgggcgcgctacctgaaactggcg
atcgagatcaaacgggtgctggcggcggccatcgagcagggcggtaccaccctgcgcgac
tttatcggtggcgacgggcagccggggtacttccagcaggaactgtttgtgtacgggcgt
ggcggacagccgtgcaaggtatgcggcactgagttgcgcgaagtgaagctggggcagagg
gcgagcgtgtactgcccgcgctgccaacgctga
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