Pseudomonas putida ND6: YSA_04558
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Entry
YSA_04558 CDS
T02170
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSA_04558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppi03021
]
YSA_04558
03019 Messenger RNA biogenesis [BR:
ppi03019
]
YSA_04558
Transcription machinery [BR:
ppi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
YSA_04558
Messenger RNA biogenesis [BR:
ppi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
YSA_04558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
AFK69242
UniProt:
I3UUS1
LinkDB
All DBs
Position
complement(2476380..2477639)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatcttttggaaatggccgaacag
atgggcatcgaaaacatggcccgttcgcgcaaacaggacgtgattttcgccctgctgaag
aagcatgcgaaaagcggcgaagagatctcgggtgacggcgtgctggagattctccaggat
ggtttcggtttcctgcgttcggctgatgcgtcctacctggccggcccagacgatatctat
gtctcgcccagccagatccgccgtttcaacctgcgtaccggcgacaccatcgtcggcaag
atccgcccaccgaaggaaggggagcgttacttcgccctgctgaaggtcgataccatcaac
ttcgaccgcccggaaaacgcgaagaacaagatcctgttcgaaaacctgacgccgctgttc
ccgaacaagcgcctgaagatggaggccggtaacggctccaccgaagacttgaccggtcgc
gtcatcgacctgtgcgccccgatcggcaaaggccagcgcggcctgatcgttgccccgccg
aaagccggtaagacgatcatgctgcagaacattgcggccaacatcacccgtaacaaccct
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgtggcgaagtggttgcttccactttcgatgagccgccaacccgccacgtg
caggttgccgagatggtgatcgagaaggccaagcgcctggtcgagcacaagaaagatgtg
gttatcctgctggactcgatcactcgactggcacgtgcctacaacaccgtgatcccgagc
tccggcaaggtgctgaccggtggtgtcgacgcccacgccctcgagaagcccaagcgcttc
ttcggtgctgcgcgtaacatcgaggaaggcggttcgctgaccattatcgccactgcgctg
gttgaaaccggctcgaagatggacgaagtgatctacgaagagttcaagggcaccggcaac
atggagctgccgctggaccgtcgcatcgccgagaagcgtgtgttcccggccatcaacatc
aaccgctccggtacccgccgcgaagagttgctgaccgctgacgacgagctgcagcgtatg
tggattctgcgcaagctgctgcacccgatggacgaaatcgccgccatcgagttcctggtc
gacaagctcaagcagaccaagaccaacgatgagttcttcctgtcgatgaagcgcaagtaa
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