Pseudomonas putida ND6: YSA_04940
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Entry
YSA_04940 CDS
T02170
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03420
Nucleotide excision repair
ppi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YSA_04940
03430 Mismatch repair
YSA_04940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppi03400
]
YSA_04940
Enzymes [BR:
ppi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YSA_04940
DNA repair and recombination proteins [BR:
ppi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YSA_04940
MMR (mismatch excision repair)
Other MMR factors
YSA_04940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
AAA_11
AAA_22
DUF5681
Motif
Other DBs
NCBI-ProteinID:
AFK69442
UniProt:
I3UVC1
LinkDB
All DBs
Position
2673986..2676172
Genome browser
AA seq
728 aa
AA seq
DB search
MRTDDLSLLLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSI
LSVTFTNKAAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSD
DQQRLIKRVMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREVYTAY
EQACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLA
RGGDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALI
ANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSN
AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRG
IGEKTVEAIREHARHSQLSMWEAMCQLLAAKALKGRAASALGAFIELIEGLAAKVVDMPL
HTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGH
ASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERR
LAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPFGGA
KTATNSNLFANASIPQTAFNLGQRVQHAVFGEGVILNFEGSGAQARVQVNFAEGSKWLML
GYAKLEAV
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacagacgacctctctctcctgctgaattccctcaacgatgcccaacgccaggcc
gtagcggccacgctcgggcgtcaactggtgcttgccggcgccggttccggtaaaacccgc
gtgctggtacaccgcatcgcctggctgatccaggtcgagcaggcatcaccgcactcgatc
ctgtcggtgacgttcaccaacaaggccgcagcagaaatgcgccagcggatcgagcaactg
ttgggcatcaacccggcaggcatgtgggtcggcaccttccacggcctggcccatcgcctg
ttgcgggcccactggcaggaagcgcggctggtgcagaacttccagatcctcgacagcgac
gaccagcagcgcctgatcaagcgggtcatgcgcgagttgggcctggacgagcagaagtgg
ccggcacgccaggcccagtggttcatcaacgggcagaaagacgaaggcctgcgcccgcag
catatccaggcggggggcgacctgttcctggcgaccatgcgcgaggtctatacggcctac
gagcaggcgtgcgagcgcgccggtgtcatcgatttctccgaactgctgcttcgcgccctg
gacctgtggcgtgaccacccgggcctgctggagcactatcaacgacgcttccgccacgtg
ctggtggacgagttccaggataccaacgccgtgcagtacgcctggttgcgcctgctggca
cgcggtggcgacagcctgatggcggtaggcgatgacgaccagtcgatctacggctggcgc
ggcgccaagatcgaaaacatccaccagtacaccgccgacttccccgacgccgaaatgatc
cgcctggagcagaactaccgctccaccggcggcatcctcaaggcggccaacgcgctgatc
gccaacaacagcgggcgcctgggcaaggaactgtggaccgacatgggcgaaggcgaacca
ctgaccctgtacgcggcctacaacgagcacgacgaagcgcgctatgtcgtggaaaccatc
gagagcctggtcaagcagggtaatgcgcgcaacgagatcgccatcctgtaccgttccaac
gcccagtcgcgcgtgctggaagaggccctgctgcgcgaacgcatcccctaccgcatctat
ggcggccagcgcttcttcgagcgcgccgaaatcaagaatgccatggcttacctgcgcctg
atcgaagggcgtggcaacgatgccgctctggagcgggtgatcaacgtgccgccgcgtggt
attggcgaaaaaaccgtcgaagccatccgcgagcacgcccgtcacagccagctgtccatg
tgggaggccatgtgccagctgctcgccgccaaagccctgaagggccgcgccgccagtgcc
ctgggggcctttatcgagctgatcgaggggctggccgccaaggttgtggacatgccgctg
cataccatgacccagaccaccatcgaacagtccggcctgatcacctatcaccaggaagaa
aaaggtgaaaagggccaggcacgcgtagaaaaccttgaggaactggtcagtgcggcacgc
aacttcgagtccaccgacgaagacgccgacctgtccccgctctcggccttccttggccac
gcctcactcgaagctggcgatactcaggctgacgagcatgaagacagcatccagctgatg
accctgcacagcgccaaaggcctggagttcccctatgtgttcctggtgggcatggaagaa
ggcttgttcccgcacaagatgagcctggaagaacccggccgcctggaagaggaacgacgc
ctggcctatgtaggcatcacccgcgccatgcgccagctggtcatgacctatgccgaaaca
cgccgcctttatggcagcgagacttacaacaaggtgtcgcgtttcgtgcgtgaaattccg
gccggcctggttcaggaagtacgcctgtccaacagtgtcagccgcccgttcggcggggcc
aagacggccaccaacagcaacctgttcgccaatgccagcattccgcagaccgcgttcaac
cttggccagcgtgtgcagcatgcagtattcggcgaaggcgtgatcctcaacttcgagggt
tctggcgctcaggcgcgggtgcaggtgaattttgccgaaggtagcaaatggctgatgctg
gggtatgccaagctcgaggctgtctaa
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