Pseudomonas putida ND6: YSA_05210
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Entry
YSA_05210 CDS
T02170
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03030
DNA replication
ppi03410
Base excision repair
ppi03420
Nucleotide excision repair
ppi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YSA_05210
03410 Base excision repair
YSA_05210
03420 Nucleotide excision repair
YSA_05210
03440 Homologous recombination
YSA_05210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppi03032
]
YSA_05210
03400 DNA repair and recombination proteins [BR:
ppi03400
]
YSA_05210
Enzymes [BR:
ppi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YSA_05210
DNA replication proteins [BR:
ppi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YSA_05210
DNA repair and recombination proteins [BR:
ppi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
YSA_05210
NER (nucleotide excision repair)
GGR (global genome repair) factors
YSA_05210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
Motif
Other DBs
NCBI-ProteinID:
AFK69586
UniProt:
I3UVR5
LinkDB
All DBs
Position
2805914..2808712
Genome browser
AA seq
932 aa
AA seq
DB search
MILAILAPDPSKRLILLMSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNML
KSLRKQYPDSLFAVVFDAKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPL
LCVEGVEADDVIGTLARSSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVH
EKFGVGPEHIIDFLALMGDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPTLA
IRGAKTLPAKLEEHRDAAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFK
SWVAEVQRDAAKAGDDVGPAVEPAAKVEPKYETILDQARFDAWLEKLRQAPLFAFDTETT
GLDAQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQ
NAKYDINILANGSPPIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIA
GKGAKQLTFNQITLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLTDIEMPLVPVL
ARIERQGALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMP
VLSKTAKGQPSTAEAVLDELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIH
TSYQQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH
LAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQ
IGVDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALR
KGAERTAINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVEQV
KDEIRQHMSQAAQLDVPLLVEAGVGANWDEAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgattctggctattctagcgccggacccgtcgaaaaggttgattctgctcatgagccaa
gcgcccctcgtcctggtggacggttcctcctacctttatcgcgccttccacgcgctgcca
ccgctgaccacgtccaagggcatgccgaccggtgcggtgaagggtgtgctgaacatgctc
aagagcctgcgcaagcaatatcccgacagcctgtttgccgtggtgttcgacgccaagggc
ggcactttccgcgatgccatgttcgccgagtacaaggctaaccgccccagcatgccggat
gacctgcgggtacagatcgagccgctgcacgccagcgtcaaggcgttgggctacccgctg
ctgtgcgtggagggtgtcgaggctgacgacgtgatcggcaccttggcgcgcagcagtgcc
gccctgggtcggccagtgatcatctcgaccggtgacaaggacatggcgcaactggtggac
gggcacattaccttggtcaacaccatgaccggaagcgtgctggacgtggctggcgtgcac
gagaagttcggcgtcggcccggaacacatcatcgacttcctggccctgatgggtgacaag
gtcgacaacatcccgggcgtgccgggcgtgggcgaaaaaacggcggtggggctgctgacc
ggcatcggcggcggtctcagcgacctttacgccaacctggacaaggtgccaacgctggcc
attcgcggcgccaagaccttgccggccaagctggaggagcaccgcgacgcggcattcctg
tcctacgagctggccaccatcaaggttgacgtgccgctggatgtcgaggtcgaggcgctg
gtgtgcggtgaacctgaccgcgaggcgttgctggcgttgtacaccgagatggagttcaag
agctgggtcgccgaagtgcagcgcgatgcggccaaggctggtgatgatgtcggcccggct
gtggagcctgcggccaaggtcgagcccaaatacgaaaccatcctcgaccaggcccgtttc
gacgcctggctggagaagctgcgccaggcaccgctgttcgccttcgacaccgagaccacc
ggcctggacgcccagcaggcgcagttggtcggcctgtccttcgctgtcgagccgcatgaa
gcggcctatgtgccgctggcccacgattatgaaggcgcgccggtccagctggaccgcgag
gccgtgctgttggcgctgaagcccttgctggaggacccggccaaggccaaggtcgggcag
aacgccaagtacgacatcaacatcctcgccaatggctccccccctatcgagatgcgcggt
gtggcctatgacaccatgctcgagtcatacgtgctgaactccaccgccacccgtcatgac
atggacagcctggcgcagaagtacctcgaccacaccacgatcgccttcgaggacatcgcc
ggcaagggtgccaagcagcttaccttcaaccagatcaccctggacaaggccggcccgtac
gccgccgaagacgccgacatcacgctgcgcctgcaccatgcattgcaggcccgcctggca
cagacgccgagcgtgcaaccggtgctgacggatatcgagatgccgctggtgccggtgctg
gccaggatcgagcgccagggtgcgttggtcgatgccgagctgttgaaagtacagagcggt
gagctgggcgtgaagatggctgagcttgagctgcgtgcctacgagctcgccggtgagacg
ttcaacctcggctcgcccaagcagctgggcacgattctttacgacaagctgggcatgccg
gtgctgagcaagaccgccaagggccagccatccaccgccgaagcagtgctcgacgaactg
gccgaacaaggctacccgctgccagaggtgctgatgcagtaccgcagcctgagtaagctc
aagagcacctacaccgacaagttaccggggcagatcaacccgcgcaccgggcgcatccac
acgtcctaccagcaggcggtggcggccaccggccggttgtcgtcgagcgacccgaacctg
cagaacattccgatccgcaccgctgaagggcggcgtattcgccaggcgttcatcgccagt
ccgggctacaagcttctggcggcggactattcacagatcgagctgcgcatcatggcccac
ctggccaaggacgaaggcttgctgcatgccttccgcaatgacctggacgtgcaccgcgcc
acggcagccgaagtgttcggtgtggccctggaagacgtgaccaccgaccagcgccgcagc
gccaaggccatcaacttcggcctgatttacggcatgagcgcctttggcctggccaagcag
atcggcgtcgaccgcaagcagtcacaggactacatcgaccgttattttgcccgctacccg
ggcgtgctggcctatatggagcgcacccgcgcccaggcggccgagcaaggctttgtcgaa
accctgtttggccgccggctgtacttgccagacatcaatgccaagaaccctgccctgcgc
aagggcgccgagcgcacggcgatcaacgccccgatgcagggtactgctgccgacatcatc
aagcgggccatggtcaaagtagataactggttgagcgagagcgggctggatgcccgggtg
atccttcaggtgcacgacgaactggtgcttgaggtacgcgaggacctggtggagcaggtg
aaagatgaaattcgccagcacatgagccaggccgcgcagctggatgtgccgctgcttgtc
gaagcaggcgttggtgcgaattgggacgaagctcactga
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