Pseudomonas putida ND6: YSA_05922
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Entry
YSA_05922 CDS
T02170
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YSA_05922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppi03021
]
YSA_05922
03400 DNA repair and recombination proteins [BR:
ppi03400
]
YSA_05922
Enzymes [BR:
ppi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YSA_05922
Transcription machinery [BR:
ppi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YSA_05922
DNA repair and recombination proteins [BR:
ppi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YSA_05922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AFK69968
UniProt:
I3UWU7
LinkDB
All DBs
Position
3205593..3209666
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK
LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR
TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
KVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLKKGVPMATP
VFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgcgaattcctgcaa
gcgggagcatccaaggatcacttccgcgacgtcggcctgcacgcggccttcaaatcggta
ttcccgatcatcagctactccggcaatgctgccctggagtacgtaggctatcgcctgggc
gaacccgccttcgatgtgaaggaatgtgtcctgcgtggcgtgaccttcgcggtcccactg
cgggtcaaggtgcgcctgatcatcttcgacaaggaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gttatcaacggtaccgagcgtgtgatcgtttcccagctgcaccgttcgcctggtgtgttc
ttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtactccgctcgcatc
atcccttaccgcggttcctggctggacttcgagttcgacccgaaggactgcgtgttcgtg
cgtatcgaccgtcgccgcaaattgccggcctcggtgctgctgcgcgccctgggttacagc
actgaagaagtgctgaataccttctacaccaccaacgtgttccacatttccggcgaaaaa
ctcagcctggaactggtgccacagcgtctgcgtggtgaagttgcagtcatggacatccat
gacgaaaccggcaaagtcatcgtcgagcaaggccgccgtattaccgcgcgccacatcaac
cagctcgagaaggccggcgtcaagcaactggacgttccaatggaatacgtcctgggccgc
actaccgccaaggctatcgtgcatccggctaccggcgaaattctcgccgaatgcaacacc
gagatgaccaccgagctgctgatcaaggtcgccaaggcgcaggttgtccgtatcgagacc
ctgtacaccaacgacatcgattgcggtccgttcatctctgacactctgaagatcgatacc
accagcaaccagctggaagctctggtcgagatctaccgcatgatgcgtccaggcgagccg
ccaaccaaggatgcagccgagaccctgttcaacaacctgttcttcagtgccgagcgttac
gatctgtccgccgtaggccgcatgaagttcaaccgtcgtatcggtcgtaccgagatcgag
ggttcgggcgtgctgagcaaggaagacatcgtcgaggttctgaagaccctggtcgatatc
cgtaacggcaaaggtatcgtcgacgacatcgaccacctgggtaaccgccgcgtacgttgc
gtcggcgagatggccgagaaccagttccgtgttggcctggtgcgtgtcgagcgcgcggtc
aaggaacgcctgtcgatggcggaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccggtagcggcggcggtgaaagagttctttggttccagccagctgtcccagttcatg
gaccagaacaaccctctctcggagattacccacaagcgccgcgtctctgcactcggccct
ggcggtctgacccgtgagcgtgccggcttcgaagtccgtgacgtacacccgacccactat
ggccgtgtgtgcccgatcgagacccctgaaggtccgaacatcggtctgatcaactccttg
gcggcctacgcccgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtgaag
gaaggcgttgtcagcgacgacatcgtgttcctgtcggcaatcgaagaggcggatcacgtc
atcgcacaggcttcggccgcgatgaacgacaagaagcaactgatcgatgagctggtagca
gttcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggttgtttccgttgcagcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccaaccctgcgtgcc
gacaagccgctggtaggtaccggcatggagcgcaacgttgcccgtgactccggtgtctgt
gtggttgctcgccgcggtggtgtgatcgactcggtcgacgctagccgtatcgttgttcgc
gttgccgacgacgaagtggaaaccggcgaagcaggtgtggatatctacaacctgaccaag
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaaaggtgac
aaggttcagcgtggtgacatcatggccgacggcccgtccaccgacatgggtgagctggct
ctgggtcagaacatgcgcatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagatcgcttcaccaccatccacattcaggaa
ctgacctgtgtggcgcgtgacaccaagctcggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagccgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgctggcgacatcctggttggcaaggtcacgccaaaaggcgaaacccagctg
actccggaagaaaaactgctgcgcgcaatcttcggtgagaaggccagcgacgttaaggac
acctccctgcgtgtgccaaccggcaccaagggtactgtcatcgacgtacaggtcttcacc
cgtgatggcgtggagcgcgatagccgcgcgctggccatcgagaagatgcagctcgacgag
atccgcaaggacctcaacgaagagttccgcattgttgaaggtgcaaccttcgagcgtctg
cgttctgccctgaacggccaggtggttgatggtggtgcgggcctgaagaaaggcaccgtg
atcactgacgaggtgctggacggtctggagcacggccagtggttcaaactgcgcatggct
gaagatgcactgaacgagcagctggaaaaggctcagcagtacatcgtcgaccgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggca
ccgggcgtactgaagatcgtcaaggtttacctggcaatccgccgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgttgtctcggtcatcatgccggttgaa
gacatgccgcacgatgccaacggtactccggttgacgtcgtactgaacccgctgggtgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaagggt
ctgggcgagaagatcgaccgcatgctcgaagagcagcgtaaagctgctgagctgcgcgtg
ttcctgaccgaggtctacaacgagatcggcggtcgtcaggaaaacctcgacgagttcacc
gacgaagagatcctggccctggctaacaacctgaagaaaggcgtgccgatggctaccccg
gtcttcgatggtgccaaggagcgcgagatcaaggccatgctgaagctggccgacctgcca
gagagcggccagatggtgctgttcgacggccgtaccggcaacaagttcgagcgtcctgtg
accgttggttacatgtacatgctcaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatacggcgcggcatac
accctgcaagaaatgctcacagtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
