Pseudomonas putida ND6: YSA_06142
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Entry
YSA_06142 CDS
T02170
Name
(GenBank) Fis family GAF modulated sigma54 specific transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
ppi
Pseudomonas putida ND6
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppi03000
]
YSA_06142
Transcription factors [BR:
ppi03000
]
Prokaryotic type
Helix-turn-helix
Other families
YSA_06142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
HTH_8
HTH_23
AAA
HTH_17
HTH_30
AAA_2
AAA_5
HTH_29
AbiEi_4
HTH_50
HVO_A0261_N
HTH_28
Xre-like-HTH
RWP-RK
HTH_7
HTH_22
AAA_16
IclR_C
HTH_26
Motif
Other DBs
NCBI-ProteinID:
AFK70089
UniProt:
I3UX68
LinkDB
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Position
3318128..3319936
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AA seq
602 aa
AA seq
DB search
MLKNADRLPQAPVPPLILDSWRRSMDVYRLDPGSQQGPRILSQSLLNECRERAELFLRIA
SDAVARLHERVRGADYCVLLTDAQGRTIDYRVESAIRNDCRKAGLYLGTCWSEGEEGTCG
VAAVLTSKAPITVHKRDHFRAAFIGLTCTAAPVFDPLGELLGVVDVSALQSPDDRRSQHL
IRQLVEQTAREIENAFFMHSAQGHWVMRAHGTPGYVESQPDYLLAWDADGRLQAINSLAR
QRLVERLGRLPEHIGELFDIDQLRRVSASSAQRLPGLGGLYGRVSAPQQRQRAQPLRQAQ
DTRIEQHLRLATRVKDCNLAVLVLGETGAGKEVFARQLHQQSQRCDGPFVTLNCAAIPET
LIESELFGYVAGAFTGASSKGMQGLLQQADGGTLFLDEIGDMPLNLQTRLLRVLAEGEVA
PLGAARRERVDIQVICATHRDLAAMVEDGRFREDLYFRLANARFELPPLRERDDRLGLIH
QLLAEEAAACGVEVVLADDALQALLVYRWPGNLRQLRQVLRYACAVSEGGQVRLQDLPQE
VRGEAVGSAESGVSCPARQLLLDALIRHRWKPADAARALGISRATLYRRVHEHRIDMPRM
KG
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgttgaagaatgccgaccgcctgccgcaggcgccggtaccaccgctgatcctcgattca
tggcgccgctccatggatgtgtaccgcctcgaccccggttcccagcaggggccgcgtatc
ctttcccaaagcctgctcaacgaatgccgcgaacgcgccgagctgttcctgcgcatcgcc
agcgatgccgtggcgcgcttgcacgaacgggtgcgcggcgctgactactgcgtgctgctt
accgatgcccaggggcgcaccattgattaccgggtcgagtcggccatccgcaacgactgt
cgcaaggctgggctgtatctggggacctgctggtcggagggcgaggagggcacatgcggt
gtggcggcggtgctgaccagcaaggccccgatcacggtgcacaagcgcgatcactttcgc
gccgccttcatcggcctgacctgcacagcggcgccggtgttcgacccgttgggcgagttg
ctgggcgtggtcgatgtgtcggccttgcagtcgccggacgatcggcgcagccagcacctg
atccgccaactggtcgagcagaccgcccgcgagatcgaaaacgctttcttcatgcacagc
gcccagggccactgggtgatgcgcgcgcatggcacgccgggctatgtggagagccaaccc
gattacctgctggcctgggatgccgatggccgcttgcaggcaatcaacagcctggcgcgg
caacggttggtggaacgcctggggcgcttgcctgagcatattggcgaactgttcgacatc
gaccaactgcgccgggtgagcgcgtcgtccgcccagcgcctgcctggtctgggcggtttg
tatggccgggtcagcgcaccgcagcaacgccagcgtgcgcagcctttgcgccaggcccag
gacacccgtatcgagcaacacctgcggttggccacgcgggtcaaggactgcaacctggcg
gtgctggtactgggtgagaccggggccggcaaggaggtattcgcccgccagctgcaccag
caaagccagcgctgtgatggcccgttcgttaccctgaactgcgcggccattccggaaacc
ctgatcgagagcgagttgttcggctatgtggccggggccttcaccggggcttccagcaaa
ggcatgcaagggctgttgcagcaggccgatggcggcacgctgttcctcgacgagatcggg
gacatgccgctgaacctgcaaacccgcctgctgcgggtgctggcggagggcgaggtggcg
ccgctgggggcggcgcggcgggagcgggtggatattcaggtgatctgtgcgacccatcgc
gatctggcggcgatggtggaggacgggcgatttcgtgaagacttgtacttccgcctggcc
aatgcccgctttgagctaccccccttgcgtgagcgtgatgaccggctggggctgattcac
cagttgctggccgaagaggctgcggcctgcggggtggaggtggtgttggcggatgacgcg
ctgcaggcgctgctggtttatcgctggccgggcaatttgcgccaactgcggcaggtgttg
cggtatgcctgtgcggtgagtgaaggcgggcaggtacggcttcaggatctgccgcaggag
gtgcgcggtgaagcagttggctcggctgaaagcggggtgtcgtgcccggcacggcagctg
ttgctggacgcgctgattcgccatcgctggaagccggctgatgcggcgcgggctttgggt
atttcgcgggcgacgctttatcggcgagtgcatgagcatcgcatcgacatgccgcggatg
aaggggtag
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