Pseudomonas putida ND6: YSA_06995
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Entry
YSA_06995 CDS
T02170
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi02020
Two-component system
ppi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
YSA_06995
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
YSA_06995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppi03021
]
YSA_06995
Transcription machinery [BR:
ppi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
YSA_06995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AFK70540
UniProt:
I3UYG9
LinkDB
All DBs
Position
complement(3780947..3782416)
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AA seq
489 aa
AA seq
DB search
MGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSDPMADNAEN
KPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSASSLPSNDDDEWD
FTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEEICAGFDPEL
DIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTEAKRLVTDFIDLLG
SRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPDVIVRKDSDRWLVE
LNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIV
EHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELKYFFSSHVS
TSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLGIA
PSSERKRLM
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgggccagcaactgacgatgacacctcagttgcaacaggccatccgcctgctccagctc
tctaccctggacctccaacaggaaatccaggaagcgctggagtcgaacccgatgctcgaa
cgtcaggaagacggcgaagacttcgacaacagcgacccgatggccgacaacgccgagaac
aagccggccgccgaagttcaggacaacagtttccaggaaagcaccgtcagcgccgacaac
ctggaagacggtgagtggagcgagcgcatccccaacgagctcccggttgatacggcctgg
gaagacatctaccagaccagcgccagcagcctgccgagcaacgatgatgacgaatgggac
ttcaccacgcgcacatcggccggcgaaagcctgcaaagccacctgctgtggcagttgaac
ctggcgccgatgtccgacaccgaccgcttgattgccgtgaccctgatcgacagcatcaac
ggccagggctacctggaagacacactcgaagaaatctgcgcagggttcgacccggagctg
gatatcgagctggacgaggtcgaagccgtactgcaccgcatccagcagttcgagccggct
ggcgtcggcgcccgcaatctgggcgaatgcctgttgctgcaactgcgccaactgcccgct
acaaccccgtggatgaccgaagccaagcgcctggtcaccgatttcatcgacctgctcggc
agccgtgactacagccagctgatgcggcggatgaaaatcaaggaagacgagctgcgccag
gtcatcgaactggtgcaaagccttaacccgcgccctggttcgcagatcgagtccagcgag
cccgagtacgtggtgcccgacgtcatcgtgcgcaaggacagcgaccgttggctggtagaa
ctgaaccaggaagccatcccacgcctgcgcgtcaacccacaatacgccggcttcgtgcgc
cgtgccgacaccagcgccgacaacaccttcatgcgcaaccagctgcaggaagcgcgctgg
ttcatcaagagcctgcaaagccgtaacgaaaccctgatgaaggttgccacgcagatcgtc
gagcaccagcgcggcttcctcgaccacggcgacgaagcgatgaagccgttggtactgcat
gacattgccgaagccgtaggcatgcacgaatcgaccatctcgcgggttaccacgcagaaa
tacatgcacaccccgcgtggcatctacgaactgaaatactttttctccagccatgtcagc
acctccgaaggcggagaatgctcgtccacggcgatccgcgcgatcatcaagaaactggtt
gcggcggaaaatcagaaaaagccattgagtgacagcaagatcgctggtttactggaggca
caaggcatccaggtagcccgtcgcaccgtcgccaagtaccgcgagtccctcggcatcgca
ccgtcgagcgaacgcaagcgactgatgtag
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